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Report for CCDS29199.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29199.1 Public Mus musculus 18 Pcdh12 23 108 98 CCDS HistoryNCBI Gene:53601Re-query CCDS DB by CCDS ID:29199.1Re-query CCDS DB by GeneID:53601See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29199.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025311.7 ENSMUSP00000025311.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025311.7Link to Ensembl Protein Viewer:ENSMUSP00000025311.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000025311Re-query CCDS DB by Protein ID:ENSMUSP00000025311
Original member Current member NCBI NM_017378.2 NP_059074.2 Accepted alive Link to Nucleotide Sequence:NM_017378.2Link to Protein Sequence:NP_059074.2Re-query CCDS DB by Nucleotide ID:NM_017378Re-query CCDS DB by Protein ID:NP_059074Link to BLAST:NP_059074.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059074.2 1180 O55134 1180 100% 0 0

Chromosomal Locations for CCDS 29199.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 38268805 38269211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 38275316 38275470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 38277828 38277928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 38281191 38284070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3543 nt):
ATGATGCTACTTCTGCCATTCCTGCTAGGGCTCTTAGGGCCAGGAAGCTACTTGTTCATTTCAGGGGATT
GTCAGGAGGTGGCCACTGTCATGGTGAAATTCCAAGTGACAGAGGAAGTGCCGTCTGGCACGGTGATAGG
GAAACTGTCCCAAGAACTAAGAGTGGAGGAGAGGCGTGGGAAGGCAGGAGATGCCTTCCAGATTCTGCAG
CTGCCTCAGGCACTGCCGGTTCAGATGAACTCTGAGGACGGCCTGCTCAGCACTTCCAGCCGGCTGGATC
GGGAGAAGCTATGTCGGCAGGAAGATCCCTGTCTGGTGTCATTTGACGTGCTTGCCACAGGGGCGTCTGC
TCTAATTCATGTGGAGATTCAGGTGCTAGACATCAATGACCACCAGCCACAGTTTCCCAAAGACGAGCAG
GAACTGGAAATCTCAGAGAGTGCCTCTCTGCACACACGAATCCCCTTGGACAGAGCTCTTGACCAAGACA
CGGGTCCTAACAGCTTATATTCCTACTCCCTGTCTCCCAGTGAACACTTTGCCCTGGATGTTATTGTGGG
CCCTGATGAGACCAAACATGCAGAGCTTGTGGTGGTGAAGGAGTTGGACAGGGAACTCCACTCATATTTT
GATCTGGTGCTGACCGCCTATGACAATGGGAATCCCCCTAAGTCAGGAATCAGCGTGGTCAAGGTCAATG
TCCTGGACTCCAATGACAATAGTCCAGTGTTTGCTGAGAGTTCACTAGCACTAGAAATCCCAGAAGACAC
TGTTCCTGGTACTCTTCTCATAAACCTGACTGCTACAGATCCCGACCAAGGACCCAATGGGGAGGTAGAG
TTCTTCTTTGGCAAGCATGTGTCCCCAGAGGTGATGAACACCTTTGGCATAGATGCCAAGACAGGCCAGA
TCATTCTGCGCCAAGCCCTAGATTACGAGAAGAACCCTGCCTATGAGGTGGATGTCCAGGCAAGGGATTT
GGGTCCCAATTCCATCCCAGGCCATTGCAAAGTTCTTATCAAAGTTCTGGATGTCAATGACAATGCCCCA
AGCATCCTCATCACGTGGGCCTCCCAGACGTCGCTGGTGTCAGAAGATCTTCCCAGGGATAGCTTCATTG
CCCTTGTCAGTGCGAATGACTTGGACTCAGGAAACAACGGTCTCGTCCACTGTTGGCTGAATCAAGAGCT
GGGCCACTTCAGACTGAAAAGGACTAACGGCAACACGTACATGCTGCTCACCAATGCCACACTGGACAGA
GAGCAGTGGCCCATATATACTCTCACTGTGTTTGCCCAAGACCAAGGACCCCAGCCCTTATCAGCTGAGA
AGGAGCTCCAAATTCAGGTTAGTGATGTCAATGACAATGCCCCTGTGTTTGAGAAGAGCCGGTACGAGGT
CTCCACTTGGGAAAATAACCCACCCTCTCTTCACCTCATCACGCTCAAAGCGCATGATGCTGACTTGGGC
AGTAATGGAAAAGTGTCATACCGTATCAAGGACTCCCCCGTTTCTCACTTAGTCATTATTGACTTTGAAA
CAGGAGAAGTCACTGCTCAGAGGTCACTGGACTATGAACAGATGGCAGGCTTTGAGTTCCAGGTGATAGC
AGAGGACAGAGGGCAACCCCAGCTCGCATCCAGCATCTCGGTGTGGGTTAGCCTCTTGGATGCCAATGAT
AATGCCCCAGAAGTGATTCAGCCTGTGCTCAGTGAAGGCAAAGCCACCCTTTCGGTGCTTGTAAATGCCT
CCACGGGCCACCTTCTGTTGCCCATTGAGAATCCCAGTGGCATGGATCCAGCAGGTACTGGTATACCACC
AAAGGCTACCCACAGCCCCTGGTCTTTCCTTTTGTTAACAATCGTGGCTAGGGATGCAGACTCGGGGGCC
AATGGGGAACTCTTCTACAGCATTCAAAGTGGGAATGATGCTCATCTCTTTTTCCTCAGCCCTTCCTTGG
GGCAGCTATTCATTAATGTCACCAATGCCAGCAGCCTCATCGGGAGTCAGTGGGACCTGGGGATAGTGGT
AGAGGACCAGGGCAGCCCCTCCTTGCAGACCCAAGTTTCATTGAAGGTCGTGTTTGTCACCAGTGTGGAC
CACCTAAGGGATTCTGCTCATGAGCCCGGAGTTCTGAGCACACCAGCACTGGCTTTGATCTGCCTGGCTG
TACTGCTGGCCATCTTTGGATTGCTCTTAGCCCTGTTCGTGTCCATCTGCAGGACAGAGAGAAAGGATAA
TAGGGCCTACAACTGTCGAGAAGCTGAGTCGTCATACCGCCACCAGCCCAAGAGGCCCCAGAAACACATT
CAGAAGGCAGATATCCACCTGGTGCCTGTGCTTAGGGCCCACGAGAATGAGACTGATGAAGTCAGGCCAT
CTCACAAGGATACCAGCAAGGAGACACTGATGGAGGCAGGCTGGGACTCTTGCCTGCAGGCCCCCTTCCA
CCTCACACCAACCCTATACAGGACCCTGCGTAACCAAGGCAACCAGGGAGAACTGGCAGAGAGCCAGGAG
GTACTGCAGGACACCTTCAACTTTCTCTTTAACCATCCCAGGCAGAGGAATGCCTCCCGGGAGAACCTAA
ACCTTCCTGAGTCCCCACCTGCTGTACGCCAACCACTCTTAAGGCCTCTGAAGGTGCCTGGTAGCCCCAT
AGCGAGGGCGACTGGAGACCAAGACAAGGAGGAGGCCCCACAGAGCCCACCAGCGTCCTCTGCAACCCTA
AGACGACAGCGGAATTTCAATGGCAAAGTGTCTCCTAGAGGAGAGTCCGGTCCTCATCAGATTCTGAGGA
GCCTGGTTAGGCTCTCTGTGGCTGCTTTTGCGGAACGGAACCCGGTGGAGGAGCCTGCTGGGGACTCTCC
TCCTGTCCAGCAAATCTCCCAGCTGCTGTCCTTGCTGCACCAGGGCCAATTCCAGCCCAAACCAAACCAC
CGAGGAAATAAATACTTGGCCAAGCCCGGCGGCAGCAGCAGGGGTACCATCCCAGACACAGAGGGCCTTG
TAGGCCTCAAGCCTAGTGGTCAAGCAGAACCTGACCTGGAAGAAGGGCCCCCGAGCCCGGAGGAGGACCT
TTCTGTAAAGCGACTTCTAGAAGAAGAGCTGTCGAGCCTGTTGGACCCTAATACAGGTCTAGCCCTGGAC
AAGCTGAGTCCGCCTGACCCAGCCTGGATGGCGAGATTGTCATTGCCCCTCACCACCAATTACCGAGACA
ACTTGTCTTCCCCCGATGCTACAACGTCAGAGGAACCGAGAACCTTCCAGACATTCGGCAAGACAGTTGG
ACCGGGACCCGAGCTGAGCCCAACAGGCACGCGCCTGGCCAGCACTTTCGTCTCGGAGATGAGCTCTCTG
CTGGAAATGTTGTTGGGGCAGCACACGGTACCAGTGGAAGCTGCGTCCGCGGCTTTGCGGAGGCTCTCGG
TGTGCGGGAGGACCCTCAGTCTAGACCTAGCCACCAGTGGGGCCTCAGCTTCAGAAGCACAGGGTAGAAA
GAAGGCAGCTGAGAGCAGACTTGGCTGTGGCAGGAATCTATGA

Translation (1180 aa):
MMLLLPFLLGLLGPGSYLFISGDCQEVATVMVKFQVTEEVPSGTVIGKLSQELRVEERRGKAGDAFQILQ
LPQALPVQMNSEDGLLSTSSRLDREKLCRQEDPCLVSFDVLATGASALIHVEIQVLDINDHQPQFPKDEQ
ELEISESASLHTRIPLDRALDQDTGPNSLYSYSLSPSEHFALDVIVGPDETKHAELVVVKELDRELHSYF
DLVLTAYDNGNPPKSGISVVKVNVLDSNDNSPVFAESSLALEIPEDTVPGTLLINLTATDPDQGPNGEVE
FFFGKHVSPEVMNTFGIDAKTGQIILRQALDYEKNPAYEVDVQARDLGPNSIPGHCKVLIKVLDVNDNAP
SILITWASQTSLVSEDLPRDSFIALVSANDLDSGNNGLVHCWLNQELGHFRLKRTNGNTYMLLTNATLDR
EQWPIYTLTVFAQDQGPQPLSAEKELQIQVSDVNDNAPVFEKSRYEVSTWENNPPSLHLITLKAHDADLG
SNGKVSYRIKDSPVSHLVIIDFETGEVTAQRSLDYEQMAGFEFQVIAEDRGQPQLASSISVWVSLLDAND
NAPEVIQPVLSEGKATLSVLVNASTGHLLLPIENPSGMDPAGTGIPPKATHSPWSFLLLTIVARDADSGA
NGELFYSIQSGNDAHLFFLSPSLGQLFINVTNASSLIGSQWDLGIVVEDQGSPSLQTQVSLKVVFVTSVD
HLRDSAHEPGVLSTPALALICLAVLLAIFGLLLALFVSICRTERKDNRAYNCREAESSYRHQPKRPQKHI
QKADIHLVPVLRAHENETDEVRPSHKDTSKETLMEAGWDSCLQAPFHLTPTLYRTLRNQGNQGELAESQE
VLQDTFNFLFNHPRQRNASRENLNLPESPPAVRQPLLRPLKVPGSPIARATGDQDKEEAPQSPPASSATL
RRQRNFNGKVSPRGESGPHQILRSLVRLSVAAFAERNPVEEPAGDSPPVQQISQLLSLLHQGQFQPKPNH
RGNKYLAKPGGSSRGTIPDTEGLVGLKPSGQAEPDLEEGPPSPEEDLSVKRLLEEELSSLLDPNTGLALD
KLSPPDPAWMARLSLPLTTNYRDNLSSPDATTSEEPRTFQTFGKTVGPGPELSPTGTRLASTFVSEMSSL
LEMLLGQHTVPVEAASAALRRLSVCGRTLSLDLATSGASASEAQGRKKAAESRLGCGRNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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