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Report for CCDS29134.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29134.1 Public Mus musculus 18 Fam53c 23 108 98 CCDS HistoryNCBI Gene:66306Re-query CCDS DB by CCDS ID:29134.1Re-query CCDS DB by GeneID:66306See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29134.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049281.11 ENSMUSP00000037034.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049281.11Link to Ensembl Protein Viewer:ENSMUSP00000037034.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000049281Re-query CCDS DB by Protein ID:ENSMUSP00000037034
Original member Current member EBI ENSMUST00000097622.3 ENSMUSP00000095226.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097622.3Link to Ensembl Protein Viewer:ENSMUSP00000095226.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000097622Re-query CCDS DB by Protein ID:ENSMUSP00000095226
Original member Current member NCBI NM_001357456.1 NP_001344385.1 Accepted alive Link to Nucleotide Sequence:NM_001357456.1Link to Protein Sequence:NP_001344385.1Re-query CCDS DB by Nucleotide ID:NM_001357456Re-query CCDS DB by Protein ID:NP_001344385Link to BLAST:NP_001344385.1
Original member Current member NCBI NM_175104.5 NP_780313.1 Accepted alive Link to Nucleotide Sequence:NM_175104.5Link to Protein Sequence:NP_780313.1Re-query CCDS DB by Nucleotide ID:NM_175104Re-query CCDS DB by Protein ID:NP_780313Link to BLAST:NP_780313.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344385.1 393 Q8BXQ8 393 100% 0 0
NP_780313.1 393 Q8BXQ8 393 100% 0 0

Chromosomal Locations for CCDS 29134.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 34762647 34762724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34763073 34763130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34768168 34768952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34770598 34770858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGATCACCCTGATCACGGAGCAGCTCCAGAAGCAGACCCTGGATGAGCTGAAATGCACGCGCTTCAGCG
TCAGTCTGCCTTTGCCTGATCATGCAGACATACCCAACTGTGGGGACCCTTTCCAGCTTGTGTCTGAAGG
TGCTTCCTGGAGGGGCCTGCCCCACTGTTCCTGTGCTGAGTTCCAGGACAGCCTCAACTTCAGCTACCAT
CCCTCAGGCCTAAGCCTGCACCTCAGACCACCCAGTCGGGGAAACTCCCCCAAGGAGCCGCCCCTCTCCC
AAGTACTGAGCCCCGAACCCCCAGACCCAGAGAAGCTTCCTGTGCCCCCTGCCCCTCCATCCAAGAGGCA
CTGCCGCTCACTCTCGGTGCCTGTGGACCTGTCTCGCTGGCAGCCGGTGTGGCGGCCTGCCCCCTCCAAG
CTGTGGACTCCCATCAAGCACCGGGGCAATGCTGGAGGGGGTGGGCCGCAGGTGCCTCAGCAGAGCCCTC
CGAAGCGGGTCTCCAGCCTCAGGTTCCTCCAAGCTCCCAGTGCCTCGTCTCAGTGTGCCCCAGCCCACAG
ACCCTACAGCCCTCCTTTCTTCAGCCTGGCCCTGGCCCAAGATTCCGCTCAGCCCTGCGCCACCTCCCCT
CAGAGTGGCTCCTGGGAGAGTGATGCAGAGTCCCTGTCGCCCTGCCCACCCCAGCGCCGCTTCTCCCTGT
CACCCAGCCTGGGCCCACAGGCGAGCCGCTTCCTGCCCTCTGCCCGGAGCTCTCCCGCGTCTTCCCCAGA
GCTGCCCTGGAGACCCCGAGGTCTCCGAAACCTTCCCCGAAGCCGCTCACAGCCTTGTGATCTGGATGCC
CGCAAAACTGGTGTCAAGCGGCGTCATGAGGAAGACTGCAGGCGCCTTCGGCCTTCCTTGGACTTTGACA
AGATGAATCAGAAACCATACTCAGGAGGTCTCTGTCTCCAAGAAACAGCCCGAGAAGAAGGCAGCAACGT
CTCTCCACCATGGTTCATGGCCTGTAGTCCCCCACCTCTCTCTGCTTCCTGCAGTCCCGTCGAGGGTTCA
TCCCAGGTGCTGAGTGAAAGCGAAGAGGAGGAAGAGGGGTCTGTGCGGTGGGAACGGCAGGCACTGAGCA
AGCGGACATTGTGCCAGCAGGACTTTGGGGACCTGGACCTGAATCTGATTGAAGAAAACTAA

Translation (393 aa):
MITLITEQLQKQTLDELKCTRFSVSLPLPDHADIPNCGDPFQLVSEGASWRGLPHCSCAEFQDSLNFSYH
PSGLSLHLRPPSRGNSPKEPPLSQVLSPEPPDPEKLPVPPAPPSKRHCRSLSVPVDLSRWQPVWRPAPSK
LWTPIKHRGNAGGGGPQVPQQSPPKRVSSLRFLQAPSASSQCAPAHRPYSPPFFSLALAQDSAQPCATSP
QSGSWESDAESLSPCPPQRRFSLSPSLGPQASRFLPSARSSPASSPELPWRPRGLRNLPRSRSQPCDLDA
RKTGVKRRHEEDCRRLRPSLDFDKMNQKPYSGGLCLQETAREEGSNVSPPWFMACSPPPLSASCSPVEGS
SQVLSESEEEEEGSVRWERQALSKRTLCQQDFGDLDLNLIEEN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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