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Report for CCDS28519.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28519.1 Public Mus musculus 17 Tekt4 23 108 98 CCDS HistoryNCBI Gene:71840Re-query CCDS DB by CCDS ID:28519.1Re-query CCDS DB by GeneID:71840See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28519.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025002.2 ENSMUSP00000025002.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025002.2Link to Ensembl Protein Viewer:ENSMUSP00000025002.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000025002Re-query CCDS DB by Protein ID:ENSMUSP00000025002
Original member NCBI NM_027951.1 NP_082227.1 Updated not alive Link to Nucleotide Sequence:NM_027951.1Link to Protein Sequence:NP_082227.1Re-query CCDS DB by Nucleotide ID:NM_027951Re-query CCDS DB by Protein ID:NP_082227
Current member NCBI NM_027951.2 NP_082227.1 Accepted alive Link to Nucleotide Sequence:NM_027951.2Link to Protein Sequence:NP_082227.1Re-query CCDS DB by Nucleotide ID:NM_027951Re-query CCDS DB by Protein ID:NP_082227Link to BLAST:NP_082227.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082227.1 447 Q149S1 447 100% 0 0

Chromosomal Locations for CCDS 28519.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 25471722 25472255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25473736 25473806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25474116 25474259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25474640 25474862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25475559 25475713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25476322 25476538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1344 nt):
ATGGCCCAAACGGGCGTGCTCCTGACCAAGGAGCCGGCCCCACAGTCAATAGATGTCTGTGAGCTTCCGC
GCAAAGAATATGAAGTGGCCTGCAATACTGGCGCCTACACGTCCTCGGGTCTGGCCACCGCTGGCTTCCG
CACAGCCAAATACCTGAGGGACGAGTGGTTTCAGAACTCTTATGCCCGCTACCACCAGGCCTTCGCAGAC
CGGGACTACTCTGAGCGGCAGCGGCATGAGAGCGGGCAGCTGGTAGCCGAGACTGGGGCACTGGCCCAGC
GCACACAACTTGACTCCACAAGAAAGGTGGGAGAGCGCCTGGAGGACATGCATTGCTGGAAGTCAGAGCT
GCAGCGAGAGATAGACGAGCTGTCTTCCGAGACGGACCTGATGATGGCCCAGAAGCTGCGGCTACAGCGC
GCCTTGGATGCCACCTCCGTGCCTTACTCCATTGCTACTGACAACCTGCAGTGCAGAGAACGCCGCCAGC
ACCCAGACCTTGTCCGGGACTATGTGGAGGTGGAGCTACTGAAGGAAACCGAGCTGATCAGGAACATCCA
GGAACTCCTGAAGAGGACGATAGGACAAGCCGTGGACCAGATACGGCTGAACAGGGAGCATAAGGAGTCG
TGTGAGATGAACTGGTCGGACAAAGTGGAAGTCTACAACATTGACGATACCTGCTCCCGCTACACCAATG
AGAGCACCCAGGTGCAGTTCTATCCGCATTCCAGCAAGTTCGAGGAGAGTGCTTCCACGCCCGAGACGTG
GGCCAAGTTCAATCACGACAACCTGCTTCGAGCCGAGCGCGAGCGGCTAGCCTCGGTTAACCTGCGGAAG
TTAATTGACTGCATCTTGCGGGATACGGCCGAGGACCTGCGGCTACAGTGCGATGCAGTGAACTCGGCTT
TCTCAAGCCGCTGCCAAGAGCTGGACGACTCACTCCAGAAGCTGCAGTACCACCTTCGAAAGACCCTGAC
GGAGATCACAGACCAGGAACACCAGATTGCAGCCTTGAAGCAGGCCATCAAGGACAAGGAGGCCCCTCTG
CGTGTGGCCCAGACTCGCCTTTACCAGCGGTCACACCGGCCCAATGTGGAGTTGTGCCGGGACAATGCCC
AGTTCAGGTTGCTGAGCGAGGTGGAGGAGTTGAACATGTCCCTCAGAGCGTTAAAGGAGAAGCTTCAGGA
TGCGGAGCAGGCACTGCGGAACCTGGAGGATTCACGCATGAGTCTGGAGAAGGACATCGCAGTCAAGACC
AACAGCCTCTTTATCGACCGCCAGAAGTGTATGACCCACCGCAACCGCTACCCCAGTGTCCTCCAGCTGG
CTGGCTACCAGTGA

Translation (447 aa):
MAQTGVLLTKEPAPQSIDVCELPRKEYEVACNTGAYTSSGLATAGFRTAKYLRDEWFQNSYARYHQAFAD
RDYSERQRHESGQLVAETGALAQRTQLDSTRKVGERLEDMHCWKSELQREIDELSSETDLMMAQKLRLQR
ALDATSVPYSIATDNLQCRERRQHPDLVRDYVEVELLKETELIRNIQELLKRTIGQAVDQIRLNREHKES
CEMNWSDKVEVYNIDDTCSRYTNESTQVQFYPHSSKFEESASTPETWAKFNHDNLLRAERERLASVNLRK
LIDCILRDTAEDLRLQCDAVNSAFSSRCQELDDSLQKLQYHLRKTLTEITDQEHQIAALKQAIKDKEAPL
RVAQTRLYQRSHRPNVELCRDNAQFRLLSEVEELNMSLRALKEKLQDAEQALRNLEDSRMSLEKDIAVKT
NSLFIDRQKCMTHRNRYPSVLQLAGYQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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