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Report for CCDS27733.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27733.1 Public Mus musculus 15 Creld2 23 108 98 CCDS HistoryNCBI Gene:76737Re-query CCDS DB by CCDS ID:27733.1Re-query CCDS DB by GeneID:76737See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27733.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024042.4 ENSMUSP00000024042.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024042.4Link to Ensembl Protein Viewer:ENSMUSP00000024042.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000024042Re-query CCDS DB by Protein ID:ENSMUSP00000024042
Original member Current member NCBI NM_029720.2 NP_083996.1 Accepted alive Link to Nucleotide Sequence:NM_029720.2Link to Protein Sequence:NP_083996.1Re-query CCDS DB by Nucleotide ID:NM_029720Re-query CCDS DB by Protein ID:NP_083996Link to BLAST:NP_083996.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083996.1 350 Q9CYA0 350 100% 0 0

Chromosomal Locations for CCDS 27733.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 88819712 88819834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88819931 88820013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88820529 88820639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88821135 88821226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88821959 88822135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88823067 88823162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88823742 88823825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88824648 88824743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88825150 88825290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88826387 88826436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGCACCTGCTGCTTGCAGCCGCGTTCGGGCTGCTGCTGCTGCTGCCGCCGCCCGGGGCCGTAGCCTCCC
GGAAGCCGACGATGTGCCAGAGATGCCGGACGCTGGTGGACAAGTTCAACCAGGGGATGGCCAACACGGC
CAGGAAGAATTTCGGTGGCGGCAACACGGCGTGGGAAGAGAAGACGCTGTCTAAGTACGAATTCAGTGAG
ATCCGGCTTCTGGAGATCATGGAGGGTCTGTGTGACAGCAGTGACTTTGAGTGCAACCAACTCTTGGAGC
AGCAGGAGGAGCAGCTAGAGGCTTGGTGGCAGACACTGAAGAAGGAGCACCCCAACCTATTTGAGTGGTT
CTGTGTACACACACTGAAAGCGTGCTGTCTTCCAGGCACCTACGGGCCAGACTGTCAAGAGTGCCAGGGT
GGGTCCGAGAGGCCTTGCAGCGGAAACGGCTATTGCAGCGGAGACGGCAGCAGACAGGGCGACGGGTCCT
GCCAGTGTCACACAGGCTACAAGGGACCACTGTGTATTGACTGCACAGACGGCTTCTTCAGCTTGCAGAG
GAACGAGACCCACAGCATCTGCTCAGCCTGTGATGAGTCTTGCAAGACCTGCTCTGGTCCAAGCAACAAA
GACTGTATCCAGTGTGAAGTGGGCTGGGCACGTGTGGAGGATGCCTGTGTGGATGTGGATGAGTGTGCAG
CAGAGACATCTCCGTGCAGCGATGGCCAGTACTGTGAGAATGTCAACGGCTCGTACACATGTGAAGACTG
TGATTCTACCTGCGTGGGCTGTACAGGAAAAGGCCCAGCCAACTGTAAGGAGTGTATTGCCGGCTACACC
AAGGAGAGTGGACAGTGCACAGATATAGATGAATGCTCACTAGAAGAAAAAGCCTGTAAGAGGAAAAACG
AAAACTGCTACAATGTTCCGGGGAGCTTCGTGTGCGTGTGTCCGGAAGGCTTTGAGGAGACAGAAGACGC
TTGTGTGCAGACAGCAGAAGGCAAAGTCACAGAGGAAAACCCCACACAGCCACCCTCCCGTGAGGATTTG
TGA

Translation (350 aa):
MHLLLAAAFGLLLLLPPPGAVASRKPTMCQRCRTLVDKFNQGMANTARKNFGGGNTAWEEKTLSKYEFSE
IRLLEIMEGLCDSSDFECNQLLEQQEEQLEAWWQTLKKEHPNLFEWFCVHTLKACCLPGTYGPDCQECQG
GSERPCSGNGYCSGDGSRQGDGSCQCHTGYKGPLCIDCTDGFFSLQRNETHSICSACDESCKTCSGPSNK
DCIQCEVGWARVEDACVDVDECAAETSPCSDGQYCENVNGSYTCEDCDSTCVGCTGKGPANCKECIAGYT
KESGQCTDIDECSLEEKACKRKNENCYNVPGSFVCVCPEGFEETEDACVQTAEGKVTEENPTQPPSREDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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