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Report for CCDS27177.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27177.2 Public Mus musculus 14 Amer2 23 108 98 CCDS HistoryNCBI Gene:72125Re-query CCDS DB by CCDS ID:27177.2Re-query CCDS DB by GeneID:72125See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 27177.1
The coding region has been updated to extend the N-terminus and this extension is supported by conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 27177.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022561.8 ENSMUSP00000022561.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022561.8Link to Ensembl Protein Viewer:ENSMUSP00000022561.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022561Re-query CCDS DB by Protein ID:ENSMUSP00000022561
Original member Current member NCBI NM_028113.4 NP_082389.2 Accepted alive Link to Nucleotide Sequence:NM_028113.4Link to Protein Sequence:NP_082389.2Re-query CCDS DB by Nucleotide ID:NM_028113Re-query CCDS DB by Protein ID:NP_082389Link to BLAST:NP_082389.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082389.2 672 Q8CCJ4-1 672 100% 0 0

Chromosomal Locations for CCDS 27177.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 60378247 60380265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2019 nt):
ATGGAGACGGGCAGGAGCCGCGGCGGCGGCGCGGCTGTCAGCGAGCGCGGCGGCGGCGCGCGCGCGGGGG
TCTGCGGGAGGCAGGAGCAGGCCGGGGCCCTCGCTGCAGACATGGACTCGCATTGTGAGTGCGCCGCGGA
GACGCCCGCCGCAGAGCCGCCGTCGGGGAAGATCAATAAGGCTGCGTTCAAGTTATTCAAGAAAAGGAAA
TCGGGGGGCACCATGCCCAGCATTTTTGGGGTCAAAAACAAAGGGGATGGGAAGAGCTCGGGGCCGACGG
GAATGGTGAGAAGCAGGACCCACGACGGACTAGCCGAGGTGTTGGTGCTGGAGGGCAGCAAGAAGGAGGA
GCCGCCTGGCGGGAGCGATCACAGCGGGGCCCGGCCGATCCCCGGACCCCCCAAACCCTCCGGGCCTGGC
CTGGGCTCCCTGGCCAGCAGCTCGGTGGCCAAGTCCCACAGCTTCTTCTCCCTGCTGAAAAAGAACGGGC
GATCGGAGACCGGCAAGGGAGACCATGCCGAGGCGAGCAAGGCTGGCGGCAAACAAAAGAGGGGGCTGAA
AGGGATCTTCAGCAGCATGCGCTGGCACCGGAGGGACAAGCGCGGCAAGGAGGAGGAGGAGAAGGCGGTG
CGCGCGGCGGGCCCGGGCAACCTGGTTCTGCCCGGTTCGCTCACCGCCAGCCTGGAGTGCGTCAAGGAGG
AGCCGCCCCGAGCCGCGCGCCGCCCGGACAGCCCGGGCCAGGACGCCTCGCGACACGCAGCAGGTGAGCC
CGCAGGGGGAGAGCAGGCGCCCGCGTCCGCCGAGAGCGCCCCGGAGCGGATCTGCCTCGAGGCCGGGAGC
CCCACCGGCTCTGGCGATCAAAGCTCCCGGGGAGAGGACGCCGAGGGGCATCGGCGCGAGGAGAAGCCCG
GGGCAGCCCTCGAGTCGGGAGCCGGTGAGGTCCAGGCGGCCGAGGATGCGTCCAAGACAGGTGACGTTCC
GATAAAGACCGTCCCCCTTGTCGACTCCGAAGGTGGCAGCGGCCGGGCGTCTGCTGTCCCTGACCCTTCC
TCTGTTGATCCACCCTCAGACCCGTCGGCAGATCGTATTTGTTTGATGTTTTCTGACGTGACTTCACTGA
AAAGCTTTGACTCTCTTACAGGCTGTGGAGATATTATTGCAGACCCAGAAGAAGAGGCAGGCCCCAGCTG
TGACAAGCATGTCCCCGGGCCAGGCAAGCCAGTTCTCTCTAAAAAGAACGCCAGCGTGGTGGCCTACCAA
GGAGGAGGGGAGGAGATGGCCAGCCCGGATCAGGTGGACGACACCTATCTCCCGGAATTCTGGGACATGT
TGTCCCAGACTGAGGACCAAGGACAAGGAACTCAAGAAGGCGCAGCGAAGGCAGCCACTGCTTCCGACAT
CAAGTTGGCCCCTGAGACCTCCAGTGATACCCGGTGTGGGGAAGCAGCCAAGGACATGTCCTCGGTCAAG
CGCAGGAGGCTCCACAGAATTCCCATTGAGTCCCAGCAGAAGGAGGAGCCCAAACATCCGGAGAAGGAGC
ATCAAGAAGGTGTTCCTAACAGCGATGAGGGCTACTGGGACTCCACCACCCCTGGCCCAGAAGAAGAGAG
CATCAGCAACAGCAGCAGCAGCAAGAAGGTGGTCATCCCCAGGGATAGCGACAGTGGCGATGCTCTCTGC
GATCTCTACGTTGAACCTGAAGCAAGCCCAGCCACCCTTCCTGCCACAGAGGACCCACCCTGCTTGTCCC
GGCTAAAGCCGGTGTCTCCAGGCACCATCACGTGTCCTCTGAGAACACCGGGCAGCTTGCTGAAGGACTC
TAAAATCCCTATTAGCATCAAGCATCTCTCCAACCTTCCGTCCAGCCATCCGGTGGTGCACCAGCAACCA
GCCAGGAGTGAGGTGCCCAGAACAAAAATCCCTGTTTCCAAAGTGCTGGTCCGTAGGGTCAGCAACCGGG
GCTTGGCTGGGACCACCATCAGGGCAGCAGCATGCCATGACAGTGCCAAAAAGTTGTGA

Translation (672 aa):
METGRSRGGGAAVSERGGGARAGVCGRQEQAGALAADMDSHCECAAETPAAEPPSGKINKAAFKLFKKRK
SGGTMPSIFGVKNKGDGKSSGPTGMVRSRTHDGLAEVLVLEGSKKEEPPGGSDHSGARPIPGPPKPSGPG
LGSLASSSVAKSHSFFSLLKKNGRSETGKGDHAEASKAGGKQKRGLKGIFSSMRWHRRDKRGKEEEEKAV
RAAGPGNLVLPGSLTASLECVKEEPPRAARRPDSPGQDASRHAAGEPAGGEQAPASAESAPERICLEAGS
PTGSGDQSSRGEDAEGHRREEKPGAALESGAGEVQAAEDASKTGDVPIKTVPLVDSEGGSGRASAVPDPS
SVDPPSDPSADRICLMFSDVTSLKSFDSLTGCGDIIADPEEEAGPSCDKHVPGPGKPVLSKKNASVVAYQ
GGGEEMASPDQVDDTYLPEFWDMLSQTEDQGQGTQEGAAKAATASDIKLAPETSSDTRCGEAAKDMSSVK
RRRLHRIPIESQQKEEPKHPEKEHQEGVPNSDEGYWDSTTPGPEEESISNSSSSKKVVIPRDSDSGDALC
DLYVEPEASPATLPATEDPPCLSRLKPVSPGTITCPLRTPGSLLKDSKIPISIKHLSNLPSSHPVVHQQP
ARSEVPRTKIPVSKVLVRRVSNRGLAGTTIRAAACHDSAKKL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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