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Report for CCDS24075.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24075.1 Public Mus musculus 10 Slc41a2 23 108 98 CCDS HistoryNCBI Gene:338365Re-query CCDS DB by CCDS ID:24075.1Re-query CCDS DB by GeneID:338365See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24075.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039956.5 ENSMUSP00000036690.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039956.5Link to Ensembl Protein Viewer:ENSMUSP00000036690.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000039956Re-query CCDS DB by Protein ID:ENSMUSP00000036690
Original member Current member NCBI NM_177388.3 NP_796362.1 Accepted alive Link to Nucleotide Sequence:NM_177388.3Link to Protein Sequence:NP_796362.1Re-query CCDS DB by Nucleotide ID:NM_177388Re-query CCDS DB by Protein ID:NP_796362Link to BLAST:NP_796362.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796362.1 573 Q8BYR8 573 100% 0 0

Chromosomal Locations for CCDS 24075.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 83233565 83233750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83254783 83254931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83256011 83256142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83281370 83281449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83283722 83283869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83297154 83297300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83301162 83301306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83304304 83304375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83313415 83313522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83316055 83316609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1722 nt):
ATGACCCACAGTAAAGGAAGACCTGTCACTTACAAGACAAGTGCCAGTCCGGAGAGTGGAGGAGGTTTTG
TAGATTGGACTTTAAATTTAAATACAATTCAATCTGACAAGTTTTTGAACTTACTTTTAAGCATGGTGCC
AGTCATTTACCAGAAAAATCAGGAAGACAGGCATAAAAAAGTAAATGGCATCTGGCAGGACGGGCTGTCG
GGTGCAGCACAGACCTTCAGCAAGAGATCAGAGCCACATCTGGACTACCACGAGTTCTCAGAGCAAGCCT
TCCACAGCAGCAGCAGTGGGCACACTCCAGCCAGCTGCAGCCCCAAGTACGATGACTATGCTGGCTATAA
CTACTGTGACGGGAGGGAGGCTTCGGAAACCACCGCCATGTTACAGGACGAAGATCTGTCCAGCGAGGGC
GATGATGTTATTGTGGAAACAAGCCAGAGGATTCCAAAGGAGTCCAGTGGGGTCATGGCTCTGCAGATAT
TGGTGCCATTCTTGCTGGCTGGGTTTGGAACGGTTTCTGCTGGCATGGTTTTGGACATAGTGCAGCACTG
GGAGGTGTTCAAAAATGTGACAGAAGTCTTCATTTTGGTCCCCGCGCTTCTTGGTCTTAAAGGAAACTTG
GAAATGACGCTGGCTTCTCGATTATCTACTGCAGTAAATGTTGGGAAGATGGACTCACCCATTGAGAAGT
GGAATCTAATCATTGGCAACTTGGCTTTAAAGCAGGTTCAGGCCACAGTGGTTGGCTTTTTAGCAGCTGT
GGCAGCCATCATACTGGGCTGGATTCCAGAAGGGAAGTATTACCTCAGCCATTCCATACTTCTGTGCTCC
AGCAGTGTGGCAACGGCCTTCATCGCATCTCTACTGCAGGGAATAATAATGGTTGGTGTTATCGTTGGCT
CCAAGAAGACTGGCATAAACCCTGACAACGTGGCCACACCCATTGCTGCTAGTTTTGGTGATCTGATAAC
TCTCGCCATATTAGCTTGGATAAGTCAGGGTTTGTACTCCTGTCTTGAGACATATTATTACATTTCCCCA
TTAGTGTGTGCCTTTTTCTTGGCTCTGACTCCTATCTGGATTATAATAGCTGCCAAGCACCCAGCTACCA
GGACAGTGCTCCACTCAGGCTGGGAGCCTGTCATAACAGCCATGGTTATAAGCAGCATCGGGGGCCTTAT
TCTGGACACAACTGTATCTGACCCAAACTTGGTTGGGATTGTTGTTTACACGCCAGTTATCAACGGGATC
GGTGGCAATTTGGTGGCCATTCAGGCTAGCAGGATTTCTACCTACCTCCATTTACATAGCATCCCCGGAG
AACTACCTGAGGAGCCCAAAGGCTGTTCCTACCCATTTAGGACATTTTTTGGTTCAGGAGTGAACAATAA
GTCTGCCCAGGTTCTCCTGCTCTTCGTGATCCCGGGCCACTTGATCTTCCTCTACACAATTCACCTGATG
AAGAGTGGCCACACCTCTCTGACTGTAGTCTTTGTTGTTGTGTACCTGTTTGCTGCTGTGCTGCAGGTGT
TCACCCTGCTGTGGATCGCCGACTGGATGGTCCATCGCTTCTGGAGAAAAGGAAAGGACCCAGACAGTTT
CTCCATCCCGTACCTCACGGCGCTGGGCGATCTGCTTGGGACTGCTCTGCTGGCCTTAAGCTTCCATTTT
CTCTGGCTCATTGGAGACCGAGATGGAGACGTTGGAGACTAA

Translation (573 aa):
MTHSKGRPVTYKTSASPESGGGFVDWTLNLNTIQSDKFLNLLLSMVPVIYQKNQEDRHKKVNGIWQDGLS
GAAQTFSKRSEPHLDYHEFSEQAFHSSSSGHTPASCSPKYDDYAGYNYCDGREASETTAMLQDEDLSSEG
DDVIVETSQRIPKESSGVMALQILVPFLLAGFGTVSAGMVLDIVQHWEVFKNVTEVFILVPALLGLKGNL
EMTLASRLSTAVNVGKMDSPIEKWNLIIGNLALKQVQATVVGFLAAVAAIILGWIPEGKYYLSHSILLCS
SSVATAFIASLLQGIIMVGVIVGSKKTGINPDNVATPIAASFGDLITLAILAWISQGLYSCLETYYYISP
LVCAFFLALTPIWIIIAAKHPATRTVLHSGWEPVITAMVISSIGGLILDTTVSDPNLVGIVVYTPVINGI
GGNLVAIQASRISTYLHLHSIPGELPEEPKGCSYPFRTFFGSGVNNKSAQVLLLFVIPGHLIFLYTIHLM
KSGHTSLTVVFVVVYLFAAVLQVFTLLWIADWMVHRFWRKGKDPDSFSIPYLTALGDLLGTALLALSFHF
LWLIGDRDGDVGD


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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