U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Slc41a2 solute carrier family 41, member 2 [ Mus musculus (house mouse) ]

Gene ID: 338365, updated on 8-Dec-2022

Summary

Official Symbol
Slc41a2provided by MGI
Official Full Name
solute carrier family 41, member 2provided by MGI
Primary source
MGI:MGI:2442940
See related
Ensembl:ENSMUSG00000034591 AllianceGenome:MGI:2442940
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
SLC41A1-L1; A230035L05Rik
Summary
Enables inorganic cation transmembrane transporter activity. Acts upstream of or within metal ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in metanephros. Orthologous to human SLC41A2 (solute carrier family 41 member 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in genital fat pad adult (RPKM 8.4), large intestine adult (RPKM 4.3) and 22 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Slc41a2 in Genome Data Viewer
Location:
10; 10 C1
Exon count:
11
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (83066712..83174657, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (83230848..83338037, complement)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene carbohydrate sulfotransferase 11 Neighboring gene RIKEN cDNA 1700025N21 gene Neighboring gene predicted gene, 53595 Neighboring gene predicted gene, 40722 Neighboring gene predicted gene, 40723 Neighboring gene NOP protein chaperone 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
acts_upstream_of_or_within metal ion transport IDA
Inferred from Direct Assay
more info
PubMed 
involved_in monoatomic cation transport IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
solute carrier family 41 member 2

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177388.3NP_796362.1  solute carrier family 41 member 2

    See identical proteins and their annotated locations for NP_796362.1

    Status: PROVISIONAL

    Source sequence(s)
    AK038549
    Consensus CDS
    CCDS24075.1
    UniProtKB/Swiss-Prot
    Q8BYR8
    UniProtKB/TrEMBL
    A0A8C6G7E8, B2RQZ3
    Related
    ENSMUSP00000036690.6, ENSMUST00000039956.6
    Conserved Domains (1) summary
    pfam01769
    Location:414555
    MgtE; Divalent cation transporter

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    83066712..83174657 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006513811.5XP_006513874.1  solute carrier family 41 member 2 isoform X1

    See identical proteins and their annotated locations for XP_006513874.1

    UniProtKB/Swiss-Prot
    Q8BYR8
    UniProtKB/TrEMBL
    A0A8C6G7E8, B2RQZ3
    Conserved Domains (1) summary
    pfam01769
    Location:414555
    MgtE; Divalent cation transporter