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Report for CCDS23614.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23614.1 Public Mus musculus 9 Xylb 23 108 98 CCDS HistoryNCBI Gene:102448Re-query CCDS DB by CCDS ID:23614.1Re-query CCDS DB by GeneID:102448See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23614.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039610.9 ENSMUSP00000047254.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039610.9Link to Ensembl Protein Viewer:ENSMUSP00000047254.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000039610Re-query CCDS DB by Protein ID:ENSMUSP00000047254
Original member Current member NCBI NM_001033209.3 NP_001028381.1 Accepted alive Link to Nucleotide Sequence:NM_001033209.3Link to Protein Sequence:NP_001028381.1Re-query CCDS DB by Nucleotide ID:NM_001033209Re-query CCDS DB by Protein ID:NP_001028381Link to BLAST:NP_001028381.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028381.1 551 Q3TNA1 551 100% 0 0

Chromosomal Locations for CCDS 23614.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 119357606 119357707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119359232 119359314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119361114 119361183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119364497 119364577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119367489 119367575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119368072 119368200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119369620 119369685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119371916 119371988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119374300 119374418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119378244 119378325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119379986 119380026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119380584 119380699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119381502 119381617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119382254 119382327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119383337 119383433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119386319 119386377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119388681 119388768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119390430 119390524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119391741 119391818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1656 nt):
ATGGACGCACGGACGCACAGACGGGCGGCGGGAACCCCCAGGGCCCTGGCGGAGCGCGCGGGGCGCCGCT
GTTGCCTGGGCTGGGACTTCAGCACGCAGCAGGTTAAAGTTGTTGCTGTTGATGCAGAGTTGAACGTCTT
CTATGAGGACAGCGTGCATTTTGACAGAGACCTTCCGGAATTTGGAACTCAGGGCGGTGTCCATGTACAC
AAGGACAGGCTGACGGTCACCTCTCCGGTCCTGATGTGGGTCCAGGCTCTGGACCTGATCCTGGGGAAGA
TGAAGTCTTCTGGCTTTGACTTCTCTCAAGTTCTAGCCTTATCTGGAGCAGGCCAGCAACACGGAAGTGT
TTACTGGAAGACTGGAGCCAGCCTGGCCCTGTCAAGCTTGTCACCAGCTCTTCCATTACATCAGCAGCTG
CAGAGCTGCTTCTCCATCAGCGACTGCCCAATATGGATGGACTCCAGTACCACAGCCCAGTGCCACCAGC
TGGAGGCTGCCGTGGGTGGGGCCCAGGCTCTCAGCTGCCTCACAGGATCCCGGGCCTATGAGCGTTTCAC
GGGGAACCAGATAGCGAAGCTTTTCCAGAAGAACCCTGAGGCCTACTCACACTCTGAGAGAATTTCCTTG
GTCAGCAGCTTTGCTGCCTCGCTGTTCCTGGGTGGGTACTCGCCCATCGACTACAGTGATGGGTCCGGAA
TGAATCTGTTGCAGATCCAGGAAAAAGTCTGGTCCCAGGCTTGTCTGGATGTCTGTGCTCCCCATTTGGA
GGAGAAGCTGGGCTCACCGGTCCCTTCCTGTTCAGTTGTGGGAACCATTTCTTCCTACTACGTCCAGCGC
TATGGATTCCCTCCAGGATGCAAAGTGGTGGCCTTCAGTGGGGACAACCCAGCGTCACTGGCCGGCATGA
GGCTGGAGGAAGGAGATATTGCGGTCAGCCTGGGCACCAGCGACACCCTGTTTCTCTGGCTCCAGAAGCC
CATGCCTGCCTTGGAAGGCCACATCTTCTGCAACCCAGTGGATCCGCAGCATTACATGGCGCTTCTATGC
TTTAAAAACGGCTCCCTCATGAGAGAGAAGATCCGAGATGAGTCGGCCTCCTGTTCCTGGAACAAGTTCT
CTAAGGCCCTGAAGTCCACGGCGATGGGGAACAACGGAAACTTGGGTTTTTATTTCGATGTAATGGAGAT
CACCCCTGAAATTATTGGGCGTCATAGGTTTAATGCGGAAAACATGGAGGTTTCAGCATTCCCTGGGGAT
GTGGAGATCCGAGCACTGATTGAAGGACAATTCATGGCCAAGAGGATTCATGCAGAAGGCCTAGGCTACA
GAGTCATGCCCAAGACAAAGATTCTGGCCACGGGAGGAGCATCTCACAATAAAGACATCTTGCAGGTGCT
TGCAGATGTTTTTGGGGCCCCCGTATACGTCATAGACACCACCAGTTCAGCCTGCGTCGGCTCCGCATAC
CGAGCTTTTCATGGCCTTGCAGGAGGGACAGGTGTGGCCTTTTCGGAGGTTGTGAAATCAGCACCTCAGC
CCAGCCTGGCTGCCACCCCCAACCCAGGAGCTTCCCAGGTCTATGCGGCCCTTCTCCCTCGATACTCTGC
ACTGGAACAGAGAATCTTGTCCACCGCCCAGAGGCCTCTGGAATGA

Translation (551 aa):
MDARTHRRAAGTPRALAERAGRRCCLGWDFSTQQVKVVAVDAELNVFYEDSVHFDRDLPEFGTQGGVHVH
KDRLTVTSPVLMWVQALDLILGKMKSSGFDFSQVLALSGAGQQHGSVYWKTGASLALSSLSPALPLHQQL
QSCFSISDCPIWMDSSTTAQCHQLEAAVGGAQALSCLTGSRAYERFTGNQIAKLFQKNPEAYSHSERISL
VSSFAASLFLGGYSPIDYSDGSGMNLLQIQEKVWSQACLDVCAPHLEEKLGSPVPSCSVVGTISSYYVQR
YGFPPGCKVVAFSGDNPASLAGMRLEEGDIAVSLGTSDTLFLWLQKPMPALEGHIFCNPVDPQHYMALLC
FKNGSLMREKIRDESASCSWNKFSKALKSTAMGNNGNLGFYFDVMEITPEIIGRHRFNAENMEVSAFPGD
VEIRALIEGQFMAKRIHAEGLGYRVMPKTKILATGGASHNKDILQVLADVFGAPVYVIDTTSSACVGSAY
RAFHGLAGGTGVAFSEVVKSAPQPSLAATPNPGASQVYAALLPRYSALEQRILSTAQRPLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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