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Report for CCDS20568.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20568.1 Public Mus musculus 6 Tspan9 23 108 98 CCDS HistoryNCBI Gene:109246Re-query CCDS DB by CCDS ID:20568.1Re-query CCDS DB by GeneID:109246See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20568.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032503.11 ENSMUSP00000032503.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032503.11Link to Ensembl Protein Viewer:ENSMUSP00000032503.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000032503Re-query CCDS DB by Protein ID:ENSMUSP00000032503
Original member Current member EBI ENSMUST00000112171.7 ENSMUSP00000107794.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112171.7Link to Ensembl Protein Viewer:ENSMUSP00000107794.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112171Re-query CCDS DB by Protein ID:ENSMUSP00000107794
Original member Current member EBI ENSMUST00000112173.7 ENSMUSP00000107796.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112173.7Link to Ensembl Protein Viewer:ENSMUSP00000107796.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112173Re-query CCDS DB by Protein ID:ENSMUSP00000107796
Original member NCBI NM_001356301.1 NP_001343230.1 Updated not alive Link to Nucleotide Sequence:NM_001356301.1Link to Protein Sequence:NP_001343230.1Re-query CCDS DB by Nucleotide ID:NM_001356301Re-query CCDS DB by Protein ID:NP_001343230
Current member NCBI NM_001356301.2 NP_001343230.1 Accepted alive Link to Nucleotide Sequence:NM_001356301.2Link to Protein Sequence:NP_001343230.1Re-query CCDS DB by Nucleotide ID:NM_001356301Re-query CCDS DB by Protein ID:NP_001343230Link to BLAST:NP_001343230.1
Original member NCBI NM_175414.5 NP_780623.1 Updated not alive Link to Nucleotide Sequence:NM_175414.5Link to Protein Sequence:NP_780623.1Re-query CCDS DB by Nucleotide ID:NM_175414Re-query CCDS DB by Protein ID:NP_780623
Current member NCBI NM_175414.6 NP_780623.1 Accepted alive Link to Nucleotide Sequence:NM_175414.6Link to Protein Sequence:NP_780623.1Re-query CCDS DB by Nucleotide ID:NM_175414Re-query CCDS DB by Protein ID:NP_780623Link to BLAST:NP_780623.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343230.1 239 Q8BJU2 239 100% 0 0
NP_780623.1 239 Q8BJU2 239 100% 0 0

Chromosomal Locations for CCDS 20568.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 127964428 127964499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127965238 127965321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127965699 127965830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127966382 127966483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127966729 127966803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127967081 127967272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128034166 128034228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (720 nt):
ATGGCCAGGGGCTGTCTCTGCTGCTTGAAGTACACGATGTTCCTCTTCAATTTGATATTCTGGCTCTGTG
GCTGTGGGCTGCTTGGAGTGGGCATCTGGCTCTCTGTGTCCCAAGGCAACTTCGCCACCTTCTCCCCCAG
CTTCCCCTCACTGTCCGCAGCCAACCTCGTCATCGCCATCGGCACCATCGTCATGGTGACGGGCTTCCTG
GGCTGCCTGGGGGCCATCAAGGAGAACAAGTGTCTGCTTCTCAGCTTCTTCATCGTGCTGTTGATCATCC
TGCTGGCAGAGTTGATTCTGATCATCCTCTTCTTCGTCTACATGGACAAGGTGAACGAGAATGCCAAGCA
GGACCTGAAAGAGGGGCTGCTGCTCTACAACACAGAGAACAACGTGGGGCTCAAGAACGCCTGGAACATC
ATCCAGGCCGAGATGCGGTGTTGTGGGGTCACTGACTACACAGACTGGTATCCGGTGCTCGGGGAGAACA
CAGTTCCTGACAGATGCTGCATGGAGAATTCCCAGGGCTGTGGGCGCAACAGCACCACCCCCTTGTGGAG
AACGGGCTGCTACGAAAAAGTGAAGCTGTGGTTTGATGACAACAAGCACGTGCTAGGCACCGTGGGCATG
TGCATCCTCATCATGCAGATCCTGGGAATGGCCTTTTCCATGACACTGTTCCAGCACATCCACCGGACAG
GTAAAAAGTACGACGCCTGA

Translation (239 aa):
MARGCLCCLKYTMFLFNLIFWLCGCGLLGVGIWLSVSQGNFATFSPSFPSLSAANLVIAIGTIVMVTGFL
GCLGAIKENKCLLLSFFIVLLIILLAELILIILFFVYMDKVNENAKQDLKEGLLLYNTENNVGLKNAWNI
IQAEMRCCGVTDYTDWYPVLGENTVPDRCCMENSQGCGRNSTTPLWRTGCYEKVKLWFDDNKHVLGTVGM
CILIMQILGMAFSMTLFQHIHRTGKKYDA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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