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Report for CCDS16293.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16293.1 Public Mus musculus 2 Pramel7 23 108 98 CCDS HistoryNCBI Gene:347712Re-query CCDS DB by CCDS ID:16293.1Re-query CCDS DB by GeneID:347712See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16293.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026957.3 ENSMUSP00000026957.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026957.3Link to Ensembl Protein Viewer:ENSMUSP00000026957.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000026957Re-query CCDS DB by Protein ID:ENSMUSP00000026957
Original member Current member NCBI NM_178250.2 NP_839981.1 Accepted alive Link to Nucleotide Sequence:NM_178250.2Link to Protein Sequence:NP_839981.1Re-query CCDS DB by Nucleotide ID:NM_178250Re-query CCDS DB by Protein ID:NP_839981Link to BLAST:NP_839981.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_839981.1 479 Q810Y8 479 100% 0 0

Chromosomal Locations for CCDS 16293.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 87489508 87490081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 87490824 87491405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 87492135 87492418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGGTCAGTGCCCCACCCACACTCCAGGATCAGGCTTTCAGGAGCCTGGTGAGGAATGAAGTATTGACCG
TCTCTGATGCGGAGTGCCTAATAAGGGAATTCTTCCCACCTCTGTTCAAGGAGGCCAGCACTCAAAAAAA
ACCAAAGACAATTATGATCCTGGTGGAGCACTGGCCCTACCCTTGCCTTCATGTTGGGTTGTTGATTGAT
AAACCCAACTTTCAGATCTTCCAGGCTATACTGGATGGAGTAGACACATGGCTGAAACGGAAGTATCGCC
CCAGGATGGGAAGGCTTAAAAAGGTTGACTTCAGGGATGCACAGCATCATGCTTCCTTAGATATGCAGGA
TGAGAGAGAGGGTAGAGACTACTTAGTAGGAACTTTGCCTAAGAAGCAAATAGTGGAGGACCACTCAAGA
ACAAGGAAAGAGCGTTTGAAGCTGTTCCATGACCTTTCCTTTATGTCTTCTCTGCATGAGGATAAACACC
AAACACTGTTATTGGAGTGGGCAAAGGAAAGGACGAGTTTCCTGCATCTGTGCTGTGAGAAGTTGGAGAT
AGGAGCAGTAGAAGTGTCTAAGGTCAGGAATGTATTAAAATTTCTACAGCCAGAGCTCATCAAGGAGTTG
AAACTGAATACAGTGGGGAATCTGTCCAAACTGGCAAAATTCGTACCTTTCATTAGAAAGATGAGAAACC
TTCAGAAACTCATGCTAGTACGCACCTTTGGAACAAGGACTTTCACTCAAGAGGAGAAGCAGAACATCAG
CAAGATCATTTCTCTGTTCTGCAAACTCAGCTGTCTCCGGCATCTCACTATTGATGATGTCTATTTTCTC
ACAGATCAGATGAAAGAGTTGCTCAGGTGTCTGGAGGCCCCATTGGTGTCCCTCAAGATCACCCTGTGCC
AGCTCTCTCAGTCAGACTTGGAGTCATTTGCCCAGCGCTGGAACTACAGTCAGCTTAAACATCTATGCTT
GAGAGGTGTCACTTTAACTAACCTAGATGTCACGCCTCTAAGAGATTTCTTAAAGCGTGTTGCAGCTAAC
CTGCAGACTCTGGACTTAGAAGACTGTAGGATGGATGATTCTCACTTCAGGACCCTTCTTCCTGCCCTGA
TCAAATGCACCCAGCTCACTAGCATCAATTTGTATGACAATGACATCTCCGAGGATGTCCTGGAGAACTT
TTTGCACCGCACTACCAATCTGAGCCAGCTGACCACAGAAATGTATCCTGCTCCATCAGAGGTCTATAAT
GAGTCCAACTATGTTATAGTAGAGATATTTATTCAGATTTGTTCTGAACTTATGAACAAACTCATGGAAG
TCAGGCAGGCCAATTCAGTGTGCTTTGGTTCCTCTTCCTGTTATGACTGTGATAATCGTTATTTATATGA
AGATGATGGGGATGTCACACTTTGTTTGTGCCAGGAGTAA

Translation (479 aa):
MVSAPPTLQDQAFRSLVRNEVLTVSDAECLIREFFPPLFKEASTQKKPKTIMILVEHWPYPCLHVGLLID
KPNFQIFQAILDGVDTWLKRKYRPRMGRLKKVDFRDAQHHASLDMQDEREGRDYLVGTLPKKQIVEDHSR
TRKERLKLFHDLSFMSSLHEDKHQTLLLEWAKERTSFLHLCCEKLEIGAVEVSKVRNVLKFLQPELIKEL
KLNTVGNLSKLAKFVPFIRKMRNLQKLMLVRTFGTRTFTQEEKQNISKIISLFCKLSCLRHLTIDDVYFL
TDQMKELLRCLEAPLVSLKITLCQLSQSDLESFAQRWNYSQLKHLCLRGVTLTNLDVTPLRDFLKRVAAN
LQTLDLEDCRMDDSHFRTLLPALIKCTQLTSINLYDNDISEDVLENFLHRTTNLSQLTTEMYPAPSEVYN
ESNYVIVEIFIQICSELMNKLMEVRQANSVCFGSSSCYDCDNRYLYEDDGDVTLCLCQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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