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Report for CCDS13779.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13779.2 Public Homo sapiens 22 SCARF2 24 110 108 CCDS HistoryNCBI Gene:91179Re-query CCDS DB by CCDS ID:13779.2Re-query CCDS DB by GeneID:91179See the combined annotation on chromosome 22 in Sequence Viewer

Public Note for CCDS 13779.1
The coding region has been updated to represent an alternative protein C-terminus as encoded by the GRCh38 reference genome assembly, and supported by the available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 13779.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000623402.1 ENSP00000485276.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000623402.1Link to Ensembl Protein Viewer:ENSP00000485276.1Re-query CCDS DB by Nucleotide ID:ENST00000623402Re-query CCDS DB by Protein ID:ENSP00000485276
Original member Current member NCBI NM_153334.7 NP_699165.3 Accepted alive Link to Nucleotide Sequence:NM_153334.7Link to Protein Sequence:NP_699165.3Re-query CCDS DB by Nucleotide ID:NM_153334Re-query CCDS DB by Protein ID:NP_699165Link to BLAST:NP_699165.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_699165.3 871 Q96GP6-1 871 100% 0 0

Chromosomal Locations for CCDS 13779.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 20425375 20426282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20427398 20427550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20429225 20429355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20429536 20429653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20429730 20429833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20430429 20430557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20430690 20430908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20431018 20431537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20431745 20431846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20431930 20431988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20437582 20437754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2616 nt):
ATGGAGGGCGCAGGGCCCCGGGGGGCCGGGCCGGCGCGGCGCCGGGGAGCCGGGGGGCCGCCGTCACCGC
TGCTGCCGTCGCTGCTGCTGCTGCTGCTGCTCTGGATGCTGCCGGACACCGTGGCGCCTCAGGAACTGAA
CCCTCGCGGCCGCAACGTGTGCCGTGCTCCCGGCTCCCAGGTGCCCACGTGCTGCGCTGGCTGGAGGCAG
CAAGGGGACGAGTGTGGGATTGCGGTGTGCGAAGGCAACTCCACGTGCTCAGAGAACGAGGTGTGCGTGA
GGCCTGGCGAGTGCCGCTGCCGCCACGGCTACTTCGGTGCCAACTGCGACACCAAGTGCCCGCGCCAGTT
CTGGGGCCCCGACTGCAAGGAGCTGTGTAGCTGCCACCCACACGGGCAGTGCGAGGACGTGACAGGCCAG
TGTACTTGTCACGCGCGGCGCTGGGGCGCGCGCTGCGAGCATGCGTGCCAGTGCCAGCACGGCACGTGCC
ACCCGCGGAGCGGCGCGTGCCGCTGTGAGCCCGGCTGGTGGGGCGCGCAGTGCGCCAGCGCGTGCTACTG
CAGCGCCACGTCGCGCTGCGACCCACAGACCGGCGCCTGCCTGTGCCACGCAGGCTGGTGGGGCCGCAGC
TGCAACAACCAGTGCGCCTGCAACTCGTCTCCCTGCGAGCAGCAGAGCGGCCGCTGTCAGTGCCGCGAGC
GTACGTTCGGCGCGCGCTGCGATCGCTACTGCCAGTGCTTCCGCGGCCGCTGCCACCCTGTGGACGGCAC
GTGTGCCTGCGAGCCGGGCTACCGCGGCAAGTACTGTCGCGAGCCGTGCCCCGCCGGCTTCTACGGCTTG
GGCTGTCGCCGCCGGTGTGGCCAGTGCAAGGGCCAGCAGCCGTGCACGGTGGCCGAGGGCCGCTGCTTGA
CGTGCGAGCCCGGCTGGAACGGAACCAAGTGCGACCAGCCTTGCGCCACCGGTTTCTATGGCGAGGGCTG
CAGCCACCGCTGTCCGCCATGCCGCGACGGGCATGCCTGTAACCATGTCACCGGCAAGTGTACGCGCTGC
AACGCGGGCTGGATCGGCGACCGGTGCGAGACCAAGTGTAGCAATGGCACTTACGGCGAGGACTGCGCCT
TCGTGTGCGCCGACTGCGGCAGCGGACACTGCGACTTCCAGTCGGGGCGCTGCCTGTGCAGCCCTGGCGT
CCACGGGCCCCACTGTAACGTGACGTGCCCGCCCGGACTCCACGGCGCGGACTGTGCTCAGGCCTGCAGC
TGCCACGAGGACACGTGCGACCCGGTCACTGGTGCCTGCCACCTAGAAACCAACCAGCGCAAGGGCGTGA
TGGGCGCGGGCGCGCTGCTCGTCCTGCTCGTCTGCCTGCTGCTCTCGCTGCTCGGCTGCTGCTGCGCTTG
CCGCGGCAAGGACCCTACGCGCCGACCCCGCCCCCGCAGGGAGCTTTCGCTTGGGAGGAAGAAGGCGCCG
CACCGACTATGCGGGCGCTTCAGTCGCATCAGCATGAAGCTGCCCCGGATCCCGCTCCGGAGGCAGAAAC
TACCCAAAGTCGTAGTGGCCCACCACGACCTGGATAACACACTCAACTGCAGCTTCCTGGAGCCACCCTC
AGGGCTGGAGCAGCCCTCACCATCCTGGTCCTCTCGGGCCTCCTTCTCCTCGTTTGACACCACTGATGAA
GGCCCTGTGTACTGTGTACCCCATGAGGAGGCACCAGCGGAGAGCCGGGACCCCGAAGTCCCCACTGTCC
CTGCCGAGGCGCCGGCGCCGTCCCCTGTGCCCTTGACCACGCCAGCCTCCGCCGAGGAGGCGATACCCCT
CCCCGCGTCCTCCGACAGCGAGCGGTCGGCGTCCAGCGTGGAGGGGCCCGGAGGGGCTCTGTACGCGCGC
GTGGCCCGACGCGAGGCCCGGCCGGCCCGGGCCCGGGGCGAGATTGGGGGCCTGTCGCTGTCGCCATCGC
CCGAGCGCAGGAAACCGCCGCCACCTGACCCCGCCACCAAGCCTAAGGTGTCCTGGATCCACGGCAAGCA
CAGCGCCGCTGCAGCTGGCCGTGCGCCCTCACCACCGCCGCCAGGCTCCGAGGCCGCGCCCAGCCCCAGC
AAGAGGAAACGGACGCCCAGCGACAAATCGGCGCATACGGTCGAACACGGCAGCCCCCGGACCCGCGACC
CAACGCCGCGGCCCCCCGGGCTGCCCGAGGAGGCGACAGCCCTCGCTGCGCCCTCGCCGCCCAGGGCCCG
AGCGCGGGGCCGCGGCCCCGGCCTCTTGGAGCCCACGGACGCCGGCGGTCCCCCGCGAAGCGCGCCCGAG
GCTGCCTCCATGTTGGCCGCTGAGCTGCGCGGCAAGACTCGCAGCCTGGGCCGCGCCGAGGTGGCCCTGG
GCGCGCAGGGCCCCAGGGAAAAGCCGGCGCCCCCACAGAAAGCCAAGCGCTCCGTGCCGCCAGCCTCGCC
CGCCCGCGCGCCCCCAGCGACCGAAACCCCGGGGCCTGAGAAGGCGGCGACCGACTTGCCCGCGCCTGAG
ACCCCCCGGAAGAAGACCCCCATCCAGAAGCCGCCGCGCAAGAAGAGCCGGGAGGCGGCGGGCGAGCTGG
GCAGGGCGGGCGCACCCACCCTGTAG

Translation (871 aa):
MEGAGPRGAGPARRRGAGGPPSPLLPSLLLLLLLWMLPDTVAPQELNPRGRNVCRAPGSQVPTCCAGWRQ
QGDECGIAVCEGNSTCSENEVCVRPGECRCRHGYFGANCDTKCPRQFWGPDCKELCSCHPHGQCEDVTGQ
CTCHARRWGARCEHACQCQHGTCHPRSGACRCEPGWWGAQCASACYCSATSRCDPQTGACLCHAGWWGRS
CNNQCACNSSPCEQQSGRCQCRERTFGARCDRYCQCFRGRCHPVDGTCACEPGYRGKYCREPCPAGFYGL
GCRRRCGQCKGQQPCTVAEGRCLTCEPGWNGTKCDQPCATGFYGEGCSHRCPPCRDGHACNHVTGKCTRC
NAGWIGDRCETKCSNGTYGEDCAFVCADCGSGHCDFQSGRCLCSPGVHGPHCNVTCPPGLHGADCAQACS
CHEDTCDPVTGACHLETNQRKGVMGAGALLVLLVCLLLSLLGCCCACRGKDPTRRPRPRRELSLGRKKAP
HRLCGRFSRISMKLPRIPLRRQKLPKVVVAHHDLDNTLNCSFLEPPSGLEQPSPSWSSRASFSSFDTTDE
GPVYCVPHEEAPAESRDPEVPTVPAEAPAPSPVPLTTPASAEEAIPLPASSDSERSASSVEGPGGALYAR
VARREARPARARGEIGGLSLSPSPERRKPPPPDPATKPKVSWIHGKHSAAAAGRAPSPPPPGSEAAPSPS
KRKRTPSDKSAHTVEHGSPRTRDPTPRPPGLPEEATALAAPSPPRARARGRGPGLLEPTDAGGPPRSAPE
AASMLAAELRGKTRSLGRAEVALGAQGPREKPAPPQKAKRSVPPASPARAPPATETPGPEKAATDLPAPE
TPRKKTPIQKPPRKKSREAAGELGRAGAPTL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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