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Report for CCDS12621.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12621.2 Public Homo sapiens 19 PHLDB3 24 110 108 CCDS HistoryNCBI Gene:653583Re-query CCDS DB by CCDS ID:12621.2Re-query CCDS DB by GeneID:653583See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 12621.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000292140.10 ENSP00000292140.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000292140.10Link to Ensembl Protein Viewer:ENSP00000292140.5Re-query CCDS DB by Nucleotide ID:ENST00000292140Re-query CCDS DB by Protein ID:ENSP00000292140
Original member Current member NCBI NM_198850.4 NP_942147.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198850.4Link to Protein Sequence:NP_942147.3Re-query CCDS DB by Nucleotide ID:NM_198850Re-query CCDS DB by Protein ID:NP_942147Link to BLAST:NP_942147.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_942147.3 640 Q6NSJ2-1 640 100% 0 0

Chromosomal Locations for CCDS 12621.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 43475410 43475544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43478047 43478132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43479377 43479593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43486266 43486322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43486609 43486696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43486780 43486870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43487024 43487123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43494702 43494815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43495256 43495339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43495495 43495620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43497118 43497279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43497748 43497876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43501734 43501871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43502101 43502283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43503906 43504118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1923 nt):
ATGGGGACGCGAAGCAGCCCCGAGGAGGGGACCCCGCCGCCGCTGGTCCCGGAATGCGACGTGGAGGTCC
AGCCCCAGGGCCATCCCGAGGAGTCCCGGGAACAGGAGGCATCCGAAGTCCTGGCGGAACCTTCGAGCCG
CGGGGGAGCTGAGCAGCAGGCAGAGGAAGAAGAAGTGGGAGAAGGCAGCAGCACTGAGAGCAGCCGCGAC
GCGCCCGAGGCTACGCCTCCGATAGCTATGGCGGCCACACCTCCCGCATCCACCTCTTCGCGGGAAGGGG
TGCGAGGGGCGGCGCGGCGCCTGCAAGGACAGCAGCTGGAGGCATTGACTCGTGTGGCCCTGATGGAGCA
GCGAGTGAAGGAGCTACAGCGCCAGAGGAAGGAGCTGAGGATCGAGATGGAGGTGGAGGTGGCCTTGCTG
CGGGGTGAGCTGGCTGGGGAGCGAGTGGCCGCTCGCCGGGAGGAGGAGCAGCTGCGGGAGCTGCTGGAGC
AGCAGGCGGCCTCGGAGCAGCGCGGCCGCCAGCAGCGGGAACAGGAACAGAGGCGGCTGAGCCAGGAACG
GGATCGCCTAGAGGGTCTTCGCCAGAGACTCCGCAAGGCCCAGGGACAGCTCGACTCACAGCCAGAGGAC
CAACGCGAGCGGCTTCTGCAGGGTGTGCAGGAGATGAGGGAACAACTGGATGTGGCCCAACGTGCCTATG
AGGACCTGGAGTTCCAGCAACTGGAGCGGGAGAGCCGGCAGGAGGAGGAGGATCGGGACAGCCCTGGGCC
CCAGGTGCCAGACCCCAAGGTCCAGGAACTCCAGGCCAGCATGGCGCAGCACAGAAGGGGTGCTCTGCAG
CACCGGATCCGGGTCCTGGAAGAGCAGCTCAAGTCACTGGGGGAGCAGATGGCAGCCGAGAGCCGGGGGT
TGAGCCGGAAGAAGGAGGAGGCCCTTCAGGCCCTGTCACAGGAACGGAGCCGGCTGCTCGAGCTCAATTG
CCTTCAGGGAACACCTGGCGGGGACTTCTCTGAGCCCAACCCGGCCCTCACTAAGCTGCTGTTCACCCAG
AAGACAGACCGCCAGCTGCTGGTGCTCCAGGATGCCGTGGCCCACTCCGCTGCCACCCCTACTTCTTCCT
GCCTCTTTTCTGTCCACAGCTCCCTGCAGGGCTCCATTGGCCTCCAGAGGACTGGGAGCCTGCCCCGGAA
AAGGGGGGAGAGGGGGAGCCAGAGAGGATCCCCCCGACCTCTGTCCTTCCATTGTACTGAATCCCTGGAG
GCCTCAGCTCTCCCGCCAGCAGTGGGGGACTCCGGCAGATACCCCCTCTACCAGCTGCTGAACTGTGGCC
GTGGGAATAGCTGTGGGGCCATCCATCCAGACATTGCCCACATGGAGCGGCTCCTGCAGCAGGCCATGGC
GGAGAGGGAGCGGCTGCTCAAGGCCCGGGAAGGAACAAGAAGGGGCACGGAAGGTTCCTCAGGCCCTGCT
GTTCCTGCCATCACGGCCCCACCCACCCCACCCCACCCTCCAGGCCCGCGAATCTTGGATCTCCGGCAGC
ATCTGGAGGGATGGGGCCACAACCCGGAAAACTGCCCACATGTGCAGGTGTCTGGGTGCTGCTGCCGTGG
ACCCCTGGTGAAGATGGGCGGCCGCATCAAGACCTGGAGGAAGCGATGGTTCTGCTTTGACCGCCAAGCC
CGCCGCTTGGCCTACTATGCGGACAAGGAAGAGACCAAGCTCAAAGGTGTCATCTACTTCCAGGCCATTG
AGGAAGTCTATTATGACCACTTACGCTGTGCCTTCAAGAGCCCCAACCCCCGCCTGACCTTCTGCGTCAA
AACCTACGAACGCCTTTTCTACATGGTGGCTCCGAGCCCCGAAGCCATGCGCATTTGGATGGACGTCATC
GTGACCGCCGCTGACGAAAACCACGCCCCCTGA

Translation (640 aa):
MGTRSSPEEGTPPPLVPECDVEVQPQGHPEESREQEASEVLAEPSSRGGAEQQAEEEEVGEGSSTESSRD
APEATPPIAMAATPPASTSSREGVRGAARRLQGQQLEALTRVALMEQRVKELQRQRKELRIEMEVEVALL
RGELAGERVAARREEEQLRELLEQQAASEQRGRQQREQEQRRLSQERDRLEGLRQRLRKAQGQLDSQPED
QRERLLQGVQEMREQLDVAQRAYEDLEFQQLERESRQEEEDRDSPGPQVPDPKVQELQASMAQHRRGALQ
HRIRVLEEQLKSLGEQMAAESRGLSRKKEEALQALSQERSRLLELNCLQGTPGGDFSEPNPALTKLLFTQ
KTDRQLLVLQDAVAHSAATPTSSCLFSVHSSLQGSIGLQRTGSLPRKRGERGSQRGSPRPLSFHCTESLE
ASALPPAVGDSGRYPLYQLLNCGRGNSCGAIHPDIAHMERLLQQAMAERERLLKAREGTRRGTEGSSGPA
VPAITAPPTPPHPPGPRILDLRQHLEGWGHNPENCPHVQVSGCCCRGPLVKMGGRIKTWRKRWFCFDRQA
RRLAYYADKEETKLKGVIYFQAIEEVYYDHLRCAFKSPNPRLTFCVKTYERLFYMVAPSPEAMRIWMDVI
VTAADENHAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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