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Report for CCDS11719.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11719.1 Public Homo sapiens 17 MIF4GD 24 110 108 CCDS HistoryNCBI Gene:57409Re-query CCDS DB by CCDS ID:11719.1Re-query CCDS DB by GeneID:57409See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11719.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000245551.9 ENSP00000245551.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000245551.9Link to Ensembl Protein Viewer:ENSP00000245551.5Re-query CCDS DB by Nucleotide ID:ENST00000245551Re-query CCDS DB by Protein ID:ENSP00000245551
Original member Current member NCBI NM_001242500.1 NP_001229429.1 Accepted alive Link to Nucleotide Sequence:NM_001242500.1Link to Protein Sequence:NP_001229429.1Re-query CCDS DB by Nucleotide ID:NM_001242500Re-query CCDS DB by Protein ID:NP_001229429Link to BLAST:NP_001229429.1
Original member Current member NCBI NM_020679.4 NP_065730.2 Accepted alive Link to Nucleotide Sequence:NM_020679.4Link to Protein Sequence:NP_065730.2Re-query CCDS DB by Nucleotide ID:NM_020679Re-query CCDS DB by Protein ID:NP_065730Link to BLAST:NP_065730.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229429.1 256 A9UHW6-2 256 100% 0 0
NP_065730.2 256 A9UHW6-2 256 100% 0 0

Chromosomal Locations for CCDS 11719.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 75266740 75266967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75267538 75267630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75267746 75267901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75268083 75268192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75269347 75269448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75270114 75270195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (771 nt):
ATGGGGGAGCCCAGTAGAGAGGAGTATAAAATCCAGTCCTTTGATGCAGAGACCCAGCAGCTGCTGAAGA
CAGCACTCAAAGTTGCCTGCTTTGAGACAGAAGATGGAGAATATTCCGTTTGCCAGAGGAGCTATAGTAA
TTGCTCTCGCCTGATGCCTTCCCGCTGTAACACGCAGTACAGAGATCCGGGTGCTGTGGACTTGGAGAAA
GTGGCCAATGTGATTGTGGACCATTCTCTGCAGGACTGTGTGTTCAGCAAGGAAGCAGGACGCATGTGCT
ACGCCATCATTCAGGCAGAGAGTAAACAAGCAGGCCAGAGTGTCTTCCGACGTGGACTCCTCAACCGGCT
GCAGCAGGAGTACCAGGCTCGGGAGCAGCTGCGAGCACGCTCCCTGCAGGGCTGGGTCTGCTATGTCACC
TTTATCTGCAACATCTTTGACTACCTGAGGGTGAACAACATGCCCATGATGGCCCTGGTGAACCCTGTCT
ATGACTGCCTCTTCCGGCTGGCCCAGCCAGACAGTTTGAGCAAGGAGGAGGAGGTGGACTGTTTGGTGCT
GCAGCTGCACCGGGTTGGGGAGCAGCTGGAGAAAATGAATGGGCAGCGCATGGATGAGCTCTTTGTGCTG
ATCCGGGATGGCTTCCTGCTCCCAACTGGCCTCAGCTCCCTGGCCCAGCTGCTGCTGCTGGAGATCATTG
AGTTCCGGGCGGCCGGCTGGAAGACAACGCCAGCTGCCCACAAGTATTACTACAGCGAAGTCTCCGACTA
G

Translation (256 aa):
MGEPSREEYKIQSFDAETQQLLKTALKVACFETEDGEYSVCQRSYSNCSRLMPSRCNTQYRDPGAVDLEK
VANVIVDHSLQDCVFSKEAGRMCYAIIQAESKQAGQSVFRRGLLNRLQQEYQAREQLRARSLQGWVCYVT
FICNIFDYLRVNNMPMMALVNPVYDCLFRLAQPDSLSKEEEVDCLVLQLHRVGEQLEKMNGQRMDELFVL
IRDGFLLPTGLSSLAQLLLLEIIEFRAAGWKTTPAAHKYYYSEVSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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