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Report for CCDS11713.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11713.1 Public Homo sapiens 17 SLC16A5 24 110 108 CCDS HistoryNCBI Gene:9121Re-query CCDS DB by CCDS ID:11713.1Re-query CCDS DB by GeneID:9121See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11713.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000329783.9 ENSP00000330141.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000329783.9Link to Ensembl Protein Viewer:ENSP00000330141.4Re-query CCDS DB by Nucleotide ID:ENST00000329783Re-query CCDS DB by Protein ID:ENSP00000330141
Original member Current member EBI ENST00000450736.6 ENSP00000390564.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000450736.6Link to Ensembl Protein Viewer:ENSP00000390564.2Re-query CCDS DB by Nucleotide ID:ENST00000450736Re-query CCDS DB by Protein ID:ENSP00000390564
Original member Current member EBI ENST00000580123.5 ENSP00000463434.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000580123.5Link to Ensembl Protein Viewer:ENSP00000463434.1Re-query CCDS DB by Nucleotide ID:ENST00000580123Re-query CCDS DB by Protein ID:ENSP00000463434
Original member Current member NCBI NM_001271765.2 NP_001258694.1 Accepted alive Link to Nucleotide Sequence:NM_001271765.2Link to Protein Sequence:NP_001258694.1Re-query CCDS DB by Nucleotide ID:NM_001271765Re-query CCDS DB by Protein ID:NP_001258694Link to BLAST:NP_001258694.1
Original member Current member NCBI NM_001369668.1 NP_001356597.1 Accepted alive Link to Nucleotide Sequence:NM_001369668.1Link to Protein Sequence:NP_001356597.1Re-query CCDS DB by Nucleotide ID:NM_001369668Re-query CCDS DB by Protein ID:NP_001356597Link to BLAST:NP_001356597.1
Original member Current member NCBI NM_004695.4 NP_004686.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004695.4Link to Protein Sequence:NP_004686.1Re-query CCDS DB by Nucleotide ID:NM_004695Re-query CCDS DB by Protein ID:NP_004686Link to BLAST:NP_004686.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258694.1 505 O15375-1 505 100% 0 0
NP_001356597.1 505 O15375-1 505 100% 0 0
NP_004686.1 505 O15375-1 505 100% 0 0

Chromosomal Locations for CCDS 11713.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 75093637 75093835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75098038 75098181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75100007 75100816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75103970 75104180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75105880 75106033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGCCCCAGGCCCTGGAGCGTGCAGATGGCAGCTGGGCCTGGGTGGTGCTGCTGGCCACCATGGTGACCC
AGGGCCTCACCCTGGGCTTCCCCACGTGTATCGGCATCTTCTTCACTGAATTGCAATGGGAGTTCCAGGC
CAGCAACAGCGAGACCTCTTGGTTCCCCTCCATCCTCACGGCTGTGCTCCACATGGCAGGGCCCCTGTGC
AGCATCCTGGTGGGACGCTTCGGCTGCCGAGTGACCGTGATGCTGGGGGGCGTGCTGGCCAGCCTGGGCA
TGGTGGCCAGCTCCTTCTCTCACAACCTCAGCCAGCTCTACTTCACAGCAGGATTCATCACAGGCCTGGG
CATGTGCTTCAGCTTCCAGTCAAGCATCACGGTGCTGGGCTTCTACTTTGTCCGCCGGCGGGTGCTGGCC
AACGCGCTGGCCTCGATGGGCGTCTCCCTGGGCATCACCCTCTGGCCGCTGCTCTCCCGCTACCTTCTGG
AGAACCTGGGCTGGAGGGGTACCTTCCTTGTCTTCGGCGGGATCTTTCTCCACTGCTGCATCTGCGGGGC
CATCATAAGGCCTGTGGCCACCAGTGTGGCCCCTGAGACCAAAGAATGTCCCCCGCCACCTCCCGAGACA
CCTGCACTTGGCTGCCTGGCTGCATGCGGCCGGACCATCCAGCGCCACCTGGCCTTCGACATCCTGCGGC
ACAACACAGGCTACTGCGTGTACATACTGGGTGTGATGTGGTCCGTCCTGGGCTTCCCACTGCCACAAGT
CTTCCTGGTGCCATATGCCATGTGGCACAGCGTGGACGAGCAGCAGGCAGCCCTCCTCATCTCCATCATC
GGCTTCAGCAACATCTTCCTGAGGCCCCTAGCCGGGCTGATGGCAGGACGGCCGGCCTTTGCTAGCCACC
GCAAGTACCTGTTCAGCCTGGCACTCCTGCTCAATGGGCTCACTAACCTGGTGTGTGCGGCATCAGGTGA
CTTCTGGGTGCTCGTGGGCTACTGCCTGGCGTACAGCGTGTCCATGAGTGGCATCGGCGCCCTCATCTTC
CAGGTTCTCATGGACATCGTCCCCATGGATCAGTTCCCCAGAGCCCTGGGACTCTTCACTGTCCTGGACG
GCCTTGCTTTCCTCATCTCCCCACCACTGGCCGGGTTGCTCCTGGACGCCACCAACAACTTTAGCTATGT
TTTCTACATGTCCAGCTTCTTCCTCATCTCAGCTGCCCTCTTCATGGGTGGCAGCTTCTACGCCCTGCAG
AAGAAGGAGCAAGGCAAGCAGGCTGTCGCGGCGGATGCCCTGGAGCGGGATCTTTTCTTGGAAGCCAAAG
ACGGTCCTGGGAAGCAACGGTCCCCTGAGATCATGTGCCAGTCTTCCCGCCAGCCACGTCCAGCTGGCGT
CAATAAGCATCTTTGGGGATGTCCTGCCTCCTCCAGGACCAGCCATGAGTGGCTCTTATGGCCAAAGGCG
GTACTGCAGGCCAAGCAAACGGCTCTGGGCTGGAATAGCCCTACCTGA

Translation (505 aa):
MPQALERADGSWAWVVLLATMVTQGLTLGFPTCIGIFFTELQWEFQASNSETSWFPSILTAVLHMAGPLC
SILVGRFGCRVTVMLGGVLASLGMVASSFSHNLSQLYFTAGFITGLGMCFSFQSSITVLGFYFVRRRVLA
NALASMGVSLGITLWPLLSRYLLENLGWRGTFLVFGGIFLHCCICGAIIRPVATSVAPETKECPPPPPET
PALGCLAACGRTIQRHLAFDILRHNTGYCVYILGVMWSVLGFPLPQVFLVPYAMWHSVDEQQAALLISII
GFSNIFLRPLAGLMAGRPAFASHRKYLFSLALLLNGLTNLVCAASGDFWVLVGYCLAYSVSMSGIGALIF
QVLMDIVPMDQFPRALGLFTVLDGLAFLISPPLAGLLLDATNNFSYVFYMSSFFLISAALFMGGSFYALQ
KKEQGKQAVAADALERDLFLEAKDGPGKQRSPEIMCQSSRQPRPAGVNKHLWGCPASSRTSHEWLLWPKA
VLQAKQTALGWNSPT


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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