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Report for CCDS1375.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1375.2 Public Homo sapiens 1 RGS1 24 110 108 CCDS HistoryNCBI Gene:5996Re-query CCDS DB by CCDS ID:1375.2Re-query CCDS DB by GeneID:5996See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 1375.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367459.8 ENSP00000356429.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367459.8Link to Ensembl Protein Viewer:ENSP00000356429.3Re-query CCDS DB by Nucleotide ID:ENST00000367459Re-query CCDS DB by Protein ID:ENSP00000356429
Original member Current member NCBI NM_002922.4 NP_002913.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002922.4Link to Protein Sequence:NP_002913.3Re-query CCDS DB by Nucleotide ID:NM_002922Re-query CCDS DB by Protein ID:NP_002913Link to BLAST:NP_002913.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002913.3 209 Q08116-1 209 100% 0 0

Chromosomal Locations for CCDS 1375.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 192575793 192575929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192576285 192576365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192576774 192576835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192578222 192578385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 192579137 192579322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (630 nt):
ATGCGCGCAGCAGCCATCTCCACTCCAAAGTTAGACAAAATGCCAGGAATGTTCTTCTCTGCTAACCCAA
AGGAATTGAAAGGAACCACTCATTCACTTCTAGACGACAAAATGCAAAAAAGGAGGCCAAAGACTTTTGG
AATGGATATGAAAGCATACCTGAGATCTATGATCCCACATCTGGAATCTGGAATGAAATCTTCCAAGTCC
AAGGATGTACTTTCTGCTGCTGAAGTAATGCAATGGTCTCAATCTCTGGAAAAACTTCTTGCCAACCAAA
CTGGTCAAAATGTCTTTGGAAGTTTCCTAAAGTCTGAATTCAGTGAGGAGAATATTGAGTTCTGGCTGGC
TTGTGAAGACTATAAGAAAACAGAGTCTGATCTTTTGCCCTGTAAAGCAGAAGAGATATATAAAGCATTT
GTGCATTCAGATGCTGCTAAACAAATCAATATTGACTTCCGCACTCGAGAATCTACAGCCAAGAAGATTA
AAGCACCAACCCCCACGTGTTTTGATGAAGCACAAAAAGTCATATATACTCTTATGGAAAAGGACTCTTA
TCCCAGGTTCCTCAAATCAGATATTTACTTAAATCTTCTAAATGACCTGCAGGCTAATAGCCTAAAGTGA

Translation (209 aa):
MRAAAISTPKLDKMPGMFFSANPKELKGTTHSLLDDKMQKRRPKTFGMDMKAYLRSMIPHLESGMKSSKS
KDVLSAAEVMQWSQSLEKLLANQTGQNVFGSFLKSEFSEENIEFWLACEDYKKTESDLLPCKAEEIYKAF
VHSDAAKQINIDFRTRESTAKKIKAPTPTCFDEAQKVIYTLMEKDSYPRFLKSDIYLNLLNDLQANSLK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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