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DRX049419: WGS sequencing of Parasteatoda tepidariorum late embryo
1 ILLUMINA (Illumina MiSeq) run: 13.1M spots, 6.6G bases, 3.4Gb downloads

Submitted by: BRH
Study: Parasteatoda tepidariorum genome and transcriptome sequencing
show Abstracthide Abstract
Classical cadherins, a metazoan-specific subfamily of the cadherin superfamily, are homophilic cell-cell adhesion molecules that regulate tissue homeostasis and morphogenesis. Although the ectodomains of classical cadherins play conserved roles for homophilic binding interactions, their domain organizations show significant variations among metazoans. To exhaustively search the genome and transcripts of the common house spider Parasteatoda tepidariorum for genes encoding classical cadherins, we obtained sequence data from this species using an Illumina Miseq sequencer. The obtained sequences were analyzed by BLAST to find sequences related to classical cadherin cytoplasmic domains. The sequence data were also used for determining the structures of identified classical cadherin genes, including the exon-intron organizations, and analyzing the transcript expression levels.
Sample: Parasteatoda tepidariorum late embryo 1
SAMD00046541 • DRS023214 • All experiments • All runs
Library:
Name: Genome DNA from a clutch of embryos, size fraction 3
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: size fractionation
Layout: PAIRED
Construction protocol:
Spot descriptor:
forward251  reverse

Runs: 1 run, 13.1M spots, 6.6G bases, 3.4Gb
Run# of Spots# of BasesSizePublished
DRR05457013,139,1086.6G3.4Gb2016-02-04

ID:
2209152

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