My Bibliography

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Currey J, Ellsworth C, Khatun MS, Wang C, Chen Z, Liu S, Midkiff C, Xiao M, Ren M, Liu F, Elgazzaz M, Fox S, Maness NJ, Rappaport J, Lazartigues E, Blair R, Kolls JK, Mauvais-Jarvis F, Qin X. Upregulation of inflammatory genes and pathways links obesity to severe COVID-19. Biochim Biophys Acta Mol Basis Dis. 2024 Oct;1870(7):167322. doi: 10.1016/j.bbadis.2024.167322. Epub 2024 Jun 26. PubMed PMID: 38942338; PubMed Central PMCID: PMC11330358.

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Faraone JN, Wang X, Qu P, Zheng YM, Vincent E, Xu H, Liu SL. Neutralizing antibody response to SARS-CoV-2 bivalent mRNA vaccine in SIV-infected rhesus macaques: Enhanced immunity to XBB subvariants by two-dose vaccination. J Med Virol. 2024 Mar;96(3):e29520. doi: 10.1002/jmv.29520. PubMed PMID: 38528837; PubMed Central PMCID: PMC10987079.

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Morgan E, Manuzak JA, Broedlow C, Hudson H, D'Aquila R, Carrico AW, Klatt NR, Mustanski B. Problematic Cannabis Use Is Associated with Reduced Rectal Microbial Species Richness and Diversity Among a Pilot Sample of Young Sexual and Gender Minorities. AIDS Res Hum Retroviruses. 2024 Jan;40(1):1-6. doi: 10.1089/aid.2022.0143. Epub 2023 Apr 5. PubMed PMID: 37022787; PubMed Central PMCID: PMC10790549.

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Roy CJ. Aerobiology-A New Open Access Journal. Aerobiology. 2023 Dec;1(1):1-2. doi: 10.3390/aerobiology1010001. Epub 2023 Aug 3. PubMed PMID: 37662559; PubMed Central PMCID: PMC10471951.

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Dufour JP, Allers C, Schiro F, Falkenstein KP, Gregoire KK, Glover CD, Chamel AN, Woods A, Phillippi JP, Gideon TM, Kaur A. Comparison of fine-needle aspiration techniques. J Med Primatol. 2023 Dec;52(6):400-404. doi: 10.1111/jmp.12676. Epub 2023 Sep 15. PubMed PMID: 37712216; PubMed Central PMCID: PMC10872887.

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Wilson A, Manuzak JA, Liang H, Leda AR, Klatt N, Lynch RM. Probiotic Therapy During Vaccination Alters Antibody Response to Simian-Human Immunodeficiency Virus Infection But Not to Commensals. AIDS Res Hum Retroviruses. 2023 May;39(5):222-231. doi: 10.1089/AID.2022.0123. Epub 2023 Feb 3. PubMed PMID: 36517984; PubMed Central PMCID: PMC10171943.

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Smith-Osborne L, Duong A, Resendez A, Palme R, Fadok JP. Female dominance hierarchies influence responses to psychosocial stressors. Curr Biol. 2023 Apr 24;33(8):1535-1549.e5. doi: 10.1016/j.cub.2023.03.020. Epub 2023 Mar 31. PubMed PMID: 37003262; PubMed Central PMCID: PMC10321215.

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Gonzalez AA, Olsen EL, Killeen SZ, Blair RV, Seshan SV, Jaimes EA, Roy CJ, Prieto MC. Elevated soluble urokinase plasminogen activator receptor is associated with renal dysfunction in a Chlorocebus atheiops COVID-19 model. J Med Primatol. 2023 Apr;52(2):131-134. doi: 10.1111/jmp.12626. Epub 2022 Nov 15. PubMed PMID: 36377612; PubMed Central PMCID: PMC10023264.

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Dumonteil E, Herrera C, Marx PA. Safety and preservation of cardiac function following therapeutic vaccination against Trypanosoma cruzi in rhesus macaques. J Microbiol Immunol Infect. 2023 Apr;56(2):400-407. doi: 10.1016/j.jmii.2022.09.003. Epub 2022 Sep 29. PubMed PMID: 36210315; PubMed Central PMCID: PMC10131272.

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Jablon KL, Akerstrom VL, Li M, Braun SE, Norton CE, Castorena-Gonzalez JA. Isolation and short-term culturing of primary lymphatic endothelial cells from collecting lymphatics: A techniques study. Microcirculation. 2023 Apr;30(2-3):e12778. doi: 10.1111/micc.12778. Epub 2022 Aug 3. PubMed PMID: 35879879; PubMed Central PMCID: PMC9873843.

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Solis-Leal A, May AM, Mohan M, Dufour JP, Ling B. Duration of antiretroviral therapy impacts the degree of residual SIV infection in the gut in long-term non-progressing Chinese rhesus macaques. J Med Virol. 2023 Jan;95(1):e28185. doi: 10.1002/jmv.28185. Epub 2022 Oct 10. PubMed PMID: 36181356; PubMed Central PMCID: PMC9839467.

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Pahar B, Gray W, Fahlberg M, Grasperge B, Hunter M, Das A, Mabee C, Aye PP, Schiro F, Hensley K, Ratnayake A, Goff K, LaBranche C, Shen X, Tomaras GD, DeMarco CT, Montefiori D, Kissinger P, Marx PA, Traina-Dorge V. Recombinant Simian Varicella Virus-Simian Immunodeficiency Virus Vaccine Induces T and B Cell Functions and Provides Partial Protection against Repeated Mucosal SIV Challenges in Rhesus Macaques. Viruses. 2022 Dec 17;14(12). doi: 10.3390/v14122819. PubMed PMID: 36560823; PubMed Central PMCID: PMC9853323.

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Roy CJ, Ehrbar D, Van Slyke G, Doering J, Didier PJ, Doyle-Meyers L, Donini O, Vitetta ES, Mantis NJ. Serum antibody profiling identifies vaccine-induced correlates of protection against aerosolized ricin toxin in rhesus macaques. NPJ Vaccines. 2022 Dec 16;7(1):164. doi: 10.1038/s41541-022-00582-x. PubMed PMID: 36526642; PubMed Central PMCID: PMC9755799.

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Fears AC, Walker EM, Chirichella N, Slisarenko N, Merino KM, Golden N, Picou B, Spencer S, Russell-Lodrigue KE, Doyle-Meyers LA, Blair RV, Beddingfield BJ, Maness NJ, Roy CJ, Rout N. The dynamics of γδ T cell responses in nonhuman primates during SARS-CoV-2 infection. Commun Biol. 2022 Dec 16;5(1):1380. doi: 10.1038/s42003-022-04310-y. PubMed PMID: 36526890; PubMed Central PMCID: PMC9756695.

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Huang Z, Zhang L, Lyon CJ, Ning B, Youngquist BM, Niu A, Beddingfield BJ, Maness NJ, Saba NS, Li CZ, Roy CJ, Hu TY. CRISPR-based assay reveals SARS-CoV-2 RNA dynamic changes and redistribution patterns in non-human primate model. Emerg Microbes Infect. 2022 Dec;11(1):629-638. doi: 10.1080/22221751.2022.2038020. PubMed PMID: 35108153; PubMed Central PMCID: PMC8865122.

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Knust B, Wongjindanon N, Moe AA, Herath L, Kaloy W, Soe TT, Sataranon P, Oo HM, Myat KZ, Win Z, Htet M, Htike M, Sudhiprapha B, Pyone AA, Win TP, Win HZ, Sawatwong P, Watthanaworawit W, Ling C, Gunaratne S, Lynn SA, Bhandari L, Nosten F, Skaggs B. Enhancing Respiratory Disease Surveillance to Detect COVID-19 in Shelters for Displaced Persons, Thailand-Myanmar Border, 2020-2021. Emerg Infect Dis. 2022 Dec;28(13):S17-S25. doi: 10.3201/eid2813.220324. Review. PubMed PMID: 36502383; PubMed Central PMCID: PMC9745244.

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Beddingfield BJ, Rowe LA, Russell-Lodrigue KE, Doyle-Meyers LA, Golden N, Spencer S, Chirichella N, Blair RV, Maness NJ, Roy CJ. Breakthrough Gastrointestinal COVID-19 and Intrahost Evolution Consequent to Combination Monoclonal Antibody Prophylaxis. J Infect Dis. 2022 Nov 1;226(9):1588-1592. doi: 10.1093/infdis/jiac134. PubMed PMID: 35429402; PubMed Central PMCID: PMC9213849.

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Khatun MS, Qin X, Pociask DA, Kolls JK. SARS-CoV2 Endotheliopathy: Insights from Single Cell RNAseq. Am J Respir Crit Care Med. 2022 Nov 1;206(9):1178-1179. doi: 10.1164/rccm.202206-1105LE. PubMed PMID: 35839476; PubMed Central PMCID: PMC9704844.

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Cabello FC, Embers ME, Newman SA, Godfrey HP. Reply to Luger, "Why Is It So Hard to Find Persistent Borreliella burgdorferi?". mBio. 2022 Oct 26;13(5):e0216922. doi: 10.1128/mbio.02169-22. Epub 2022 Aug 22. PubMed PMID: 35993732; PubMed Central PMCID: PMC9600376.

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Kight E, Alfaro R, Gadila SKG, Chang S, Evans D, Embers M, Haselton F. Direct Capture and Early Detection of Lyme Disease Spirochete in Skin with a Microneedle Patch. Biosensors (Basel). 2022 Oct 2;12(10). doi: 10.3390/bios12100819. PubMed PMID: 36290956; PubMed Central PMCID: PMC9599122.

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Apetrei C, Marx PA, Mellors JW, Pandrea I. The COVID misinfodemic: not new, never more lethal. Trends Microbiol. 2022 Oct;30(10):948-958. doi: 10.1016/j.tim.2022.07.004. Epub 2022 Aug 6. Review. PubMed PMID: 35945120; PubMed Central PMCID: PMC9356696.

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Schmitt K, Curlin J, Remling-Mulder L, Morrison J, Moriarty R, Goff K, Stenglein M, O'Connor S, Marx P, Akkina R. Long-term evolutionary adaptation of SIVcpz toward HIV-1 using a humanized mouse model. J Med Primatol. 2022 Oct;51(5):288-291. doi: 10.1111/jmp.12616. Epub 2022 Aug 28. PubMed PMID: 36030391; PubMed Central PMCID: PMC9536748.

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Curlin JZ, Schmitt K, Remling-Mulder L, Morrison J, Baczenas JJ, Tibbits CV, Goff K, O'Connor S, Stenglein M, Marx P, Akkina R. Evolution of SIVmac239 following serial passaging in humanized mice. J Med Primatol. 2022 Oct;51(5):284-287. doi: 10.1111/jmp.12614. Epub 2022 Aug 28. PubMed PMID: 36030392; PubMed Central PMCID: PMC9536747.

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Bohm RP, Breed MW, Cohen JK, Haertel AJ, Halliday LC, Kramer JA, Lieberman MT, Rice KA, Roberts JA, Russell-Logrigue KE, Salyards GW, Scorpio DG, Weese JS. Formal Comment on "Mitigation of endemic GI-tract pathogen-mediated inflammation through development of multimodal treatment regimen and its impact on SIV acquisition in rhesus macaques" by Bochart et al. (2021). PLoS Pathog. 2022 Sep;18(9):e1010831. doi: 10.1371/journal.ppat.1010831. eCollection 2022 Sep. PubMed PMID: 36166449; PubMed Central PMCID: PMC9514602.

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Lee JH, Sutton HJ, Cottrell CA, Phung I, Ozorowski G, Sewall LM, Nedellec R, Nakao C, Silva M, Richey ST, Torres JL, Lee WH, Georgeson E, Kubitz M, Hodges S, Mullen TM, Adachi Y, Cirelli KM, Kaur A, Allers C, Fahlberg M, Grasperge BF, Dufour JP, Schiro F, Aye PP, Kalyuzhniy O, Liguori A, Carnathan DG, Silvestri G, Shen X, Montefiori DC, Veazey RS, Ward AB, Hangartner L, Burton DR, Irvine DJ, Schief WR, Crotty S. Long-primed germinal centres with enduring affinity maturation and clonal migration. Nature. 2022 Sep;609(7929):998-1004. doi: 10.1038/s41586-022-05216-9. Epub 2022 Sep 21. PubMed PMID: 36131022; PubMed Central PMCID: PMC9491273.

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Permar SR, Kaur A, Fruh K. Derisking Human Cytomegalovirus Vaccine Clinical Development in Relevant Preclinical Models. J Infect Dis. 2022 Sep 4;226(4):563-565. doi: 10.1093/infdis/jiac131. PubMed PMID: 35415750; PubMed Central PMCID: PMC9441196.

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Brosseau LM, Escandón K, Ulrich AK, Rasmussen AL, Roy CJ, Bix GJ, Popescu SV, Moore KA, Osterholm MT. Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Dose, Infection, and Disease Outcomes for Coronavirus Disease 2019 (COVID-19): A Review. Clin Infect Dis. 2022 Aug 24;75(1):e1195-e1201. doi: 10.1093/cid/ciab903. Review. PubMed PMID: 34651164; PubMed Central PMCID: PMC8524637.

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Weindel CG, Martinez EL, Zhao X, Mabry CJ, Bell SL, Vail KJ, Coleman AK, VanPortfliet JJ, Zhao B, Wagner AR, Azam S, Scott HM, Li P, West AP, Karpac J, Patrick KL, Watson RO. Mitochondrial ROS promotes susceptibility to infection via gasdermin D-mediated necroptosis. Cell. 2022 Aug 18;185(17):3214-3231.e23. doi: 10.1016/j.cell.2022.06.038. Epub 2022 Jul 30. PubMed PMID: 35907404; PubMed Central PMCID: PMC9531054.

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Wang X, Vincent E, Siddiqui S, Turnbull K, Lu H, Blair R, Wu X, Watkins M, Ziani W, Shao J, Doyle-Meyers LA, Russell-Lodrigue KE, Bohm RP, Veazey RS, Xu H. Early treatment regimens achieve sustained virologic remission in infant macaques infected with SIV at birth. Nat Commun. 2022 Aug 16;13(1):4823. doi: 10.1038/s41467-022-32554-z. PubMed PMID: 35973985; PubMed Central PMCID: PMC9381774.

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Izadpanah A, Daneshimehr F, Willingham K, Barabadi Z, Braun SE, Dumont A, Mostany R, Chandrasekar B, Alt EU, Izadpanah R. Targeting TRAF3IP2 inhibits angiogenesis in glioblastoma. Front Oncol. 2022;12:893820. doi: 10.3389/fonc.2022.893820. eCollection 2022. PubMed PMID: 36046049; PubMed Central PMCID: PMC9421153.

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Yee JL, Grant R, Haertel AJ, Allers C, Carpenter AB, Van Rompay KKA, Roberts JA. Multi-site proficiency testing for validation and standardization of assays to detect specific pathogen-free viruses, coronaviruses, and other agents in nonhuman primates. J Med Primatol. 2022 Aug;51(4):234-245. doi: 10.1111/jmp.12586. Epub 2022 Apr 14. Review. PubMed PMID: 35426147; PubMed Central PMCID: PMC9851150.

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Rahmberg AR, Markowitz TE, Mudd JC, Hirsch V, Brenchley JM. Epigenetic Reprogramming Leads to Downregulation of CD4 and Functional Changes in African Green Monkey Memory CD4(+) T Cells. J Immunol. 2022 Jul 15;209(2):337-345. doi: 10.4049/jimmunol.2200109. Epub 2022 Jun 24. PubMed PMID: 35750337; PubMed Central PMCID: PMC9283288.

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Yang L, Liang T, Pierson LM, Wang H, Fletcher JK, Wang S, Bao D, Zhang L, Huang Z, Zheng W, Zhang X, Park H, Li Y, Robinson JE, Feehan AK, Lyon CJ, Cao J, Morici LA, Li C, Roy CJ, Yu X, Hu T. SARS-CoV-2 Epitopes following Infection and Vaccination Overlap Known Neutralizing Antibody Sites. Research (Wash D C). 2022;2022:9769803. doi: 10.34133/2022/9769803. eCollection 2022. PubMed PMID: 35928300; PubMed Central PMCID: PMC9297724.

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Ball EE, Pesavento PA, Van Rompay KKA, Keel MK, Singapuri A, Gomez-Vazquez JP, Dudley DM, O'Connor DH, Breitbach ME, Maness NJ, Schouest B, Panganiban A, Coffey LL. Zika virus persistence in the male macaque reproductive tract. PLoS Negl Trop Dis. 2022 Jul;16(7):e0010566. doi: 10.1371/journal.pntd.0010566. eCollection 2022 Jul. PubMed PMID: 35788751; PubMed Central PMCID: PMC9299295.

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Fears AC, Beddingfield BJ, Chirichella NR, Slisarenko N, Killeen SZ, Redmann RK, Goff K, Spencer S, Picou B, Golden N, Midkiff CC, Bush DJ, Branco LM, Boisen ML, Gao H, Montefiori DC, Blair RV, Doyle-Meyers LA, Russell-Lodrigue K, Maness NJ, Roy CJ. Exposure modality influences viral kinetics but not respiratory outcome of COVID-19 in multiple nonhuman primate species. PLoS Pathog. 2022 Jul;18(7):e1010618. doi: 10.1371/journal.ppat.1010618. eCollection 2022 Jul. PubMed PMID: 35789343; PubMed Central PMCID: PMC9286241.

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Bucşan AN, Veatch A, Singh DK, Akter S, Golden NA, Kirkpatrick M, Threeton B, Moodley C, Ahmed M, Doyle LA, Russell-Lodrigue K, Norton EB, Didier PJ, Roy CJ, Abramovitch RB, Mehra S, Khader SA, Kaushal D. Response to Hypoxia and the Ensuing Dysregulation of Inflammation Impacts Mycobacterium tuberculosis Pathogenicity. Am J Respir Crit Care Med. 2022 Jul 1;206(1):94-104. doi: 10.1164/rccm.202112-2747OC. PubMed PMID: 35412961; PubMed Central PMCID: PMC9718519.

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Curtis MW, Krishnavajhala A, Kneubehl AR, Embers ME, Gettings JR, Yabsley MJ, Lopez JE. Characterization of Immunological Responses to Borrelia Immunogenic Protein A (BipA), a Species-Specific Antigen for North American Tick-Borne Relapsing Fever. Microbiol Spectr. 2022 Jun 29;10(3):e0172221. doi: 10.1128/spectrum.01722-21. Epub 2022 May 17. PubMed PMID: 35579456; PubMed Central PMCID: PMC9241729.

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Cabello FC, Embers ME, Newman SA, Godfrey HP. Borreliella burgdorferi Antimicrobial-Tolerant Persistence in Lyme Disease and Posttreatment Lyme Disease Syndromes. mBio. 2022 Jun 28;13(3):e0344021. doi: 10.1128/mbio.03440-21. Epub 2022 Apr 25. Review. PubMed PMID: 35467428; PubMed Central PMCID: PMC9239140.

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Li W, Kitsios GD, Bain W, Wang C, Li T, Fanning KV, Deshpande R, Qin X, Morris A, Lee JS, Zou C. Stability of SARS-CoV-2-Encoded Proteins and Their Antibody Levels Correlate with Interleukin 6 in COVID-19 Patients. mSystems. 2022 Jun 28;7(3):e0005822. doi: 10.1128/msystems.00058-22. Epub 2022 May 18. PubMed PMID: 35582921; PubMed Central PMCID: PMC9238396.

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Lawrence SP, Elser SE, Torben W, Blair RV, Pahar B, Aye PP, Schiro F, Szeltner D, Doyle-Meyers LA, Haggarty BS, Jordan APO, Romano J, Leslie GJ, Alvarez X, O'Connor DH, Wiseman RW, Fennessey CM, Li Y, Piatak M Jr, Lifson JD, LaBranche CC, Lackner AA, Keele BF, Maness NJ, Marsh M, Hoxie JA. A cellular trafficking signal in the SIV envelope protein cytoplasmic domain is strongly selected for in pathogenic infection. PLoS Pathog. 2022 Jun;18(6):e1010507. doi: 10.1371/journal.ppat.1010507. eCollection 2022 Jun. PubMed PMID: 35714165; PubMed Central PMCID: PMC9275724.

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Herrera C, Cottrell ML, Prybylski J, Kashuba ADM, Veazey RS, García-Pérez J, Olejniczak N, McCoy CF, Ziprin P, Richardson-Harman N, Alcami J, Malcolm KR, Shattock RJ. The ex vivo pharmacology of HIV-1 antiretrovirals differs between macaques and humans. iScience. 2022 Jun 17;25(6):104409. doi: 10.1016/j.isci.2022.104409. eCollection 2022 Jun 17. PubMed PMID: 35663021; PubMed Central PMCID: PMC9157191.

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Duchaine C, Roy CJ. Bioaerosols and airborne transmission: Integrating biological complexity into our perspective. Sci Total Environ. 2022 Jun 15;825:154117. doi: 10.1016/j.scitotenv.2022.154117. Epub 2022 Feb 24. PubMed PMID: 35218821; PubMed Central PMCID: PMC8865953.

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Kuang E, Cross RW, McCavitt-Malvido M, Abelson DM, Borisevich V, Stuart L, Agans KN, Mlakar N, Marimuthu A, Deer DJ, Shestowsky WS, Kim D, Geisbert JB, Zeitlin L, Moyer CL, Roy CJ, Geisbert TW, Bornholdt ZA. Reversion of Ebolavirus Disease from a Single Intramuscular Injection of a Pan-Ebolavirus Immunotherapeutic. Pathogens. 2022 Jun 7;11(6). doi: 10.3390/pathogens11060655. PubMed PMID: 35745509; PubMed Central PMCID: PMC9228268.

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Pomerantz O, Baker KC, Bellanca RU, Bloomsmith MA, Coleman K, Hutchinson EK, Pierre PJ, Weed JL. Improving transparency-A call to include social housing information in biomedical research articles involving nonhuman primates. Am J Primatol. 2022 Jun;84(6):e23378. doi: 10.1002/ajp.23378. Epub 2022 Apr 1. PubMed PMID: 35365857; PubMed Central PMCID: PMC9271600.

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Mahalingam R, Feia B, Coleman C, Anupindi K, Saravanan P, Luthens A, Bustillos A, Das A, de Haro E, Doyle-Meyers L, Looper J, Bubak AN, Niemeyer CS, Palmer B, Nagel MA, Traina-Dorge V. Simian Varicella Virus Pathogenesis in Skin during Varicella and Zoster. Viruses. 2022 May 27;14(6). doi: 10.3390/v14061167. PubMed PMID: 35746639; PubMed Central PMCID: PMC9227806.

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Kumar D, Downs LP, Embers M, Flynt AS, Karim S. Identification of microRNAs in the Lyme Disease Vector Ixodes scapularis. Int J Mol Sci. 2022 May 16;23(10). doi: 10.3390/ijms23105565. PubMed PMID: 35628370; PubMed Central PMCID: PMC9141961.

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Currey JM, Rabito F, Maness NJ, Blair RV, Rappaport J, Qin X, Kolls JK, Srivastava AK. C57BL/6J Mice Are Not Suitable for Modeling Severe SARS-CoV-2 Beta and Gamma Variant Infection. Viruses. 2022 May 5;14(5). doi: 10.3390/v14050966. PubMed PMID: 35632708; PubMed Central PMCID: PMC9145451.

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Jacobs MB, Grasperge BJ, Doyle-Meyers LA, Embers ME. Borrelia burgdorferi Migration Assays for Evaluation of Chemoattractants in Tick Saliva. Pathogens. 2022 May 1;11(5). doi: 10.3390/pathogens11050530. PubMed PMID: 35631051; PubMed Central PMCID: PMC9147933.

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Garcia AN, Casanova NG, Kempf CL, Bermudez T, Valera DG, Song JH, Sun X, Cai H, Moreno-Vinasco L, Gregory T, Oita RC, Hernon VR, Camp SM, Rogers C, Kyubwa EM, Menon N, Axtelle J, Rappaport J, Bime C, Sammani S, Cress AE, Garcia JGN. eNAMPT Is a Novel Damage-associated Molecular Pattern Protein That Contributes to the Severity of Radiation-induced Lung Fibrosis. Am J Respir Cell Mol Biol. 2022 May;66(5):497-509. doi: 10.1165/rcmb.2021-0357OC. PubMed PMID: 35167418; PubMed Central PMCID: PMC9116358.

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Izadpanah A, Rappaport J, Datta PK. Epitranscriptomics of SARS-CoV-2 Infection. Front Cell Dev Biol. 2022;10:849298. doi: 10.3389/fcell.2022.849298. eCollection 2022. Review. PubMed PMID: 35465335; PubMed Central PMCID: PMC9032796.