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Report for CCDS23061.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23061.1 Public Mus musculus 9 Or8g54 23 108 98 CCDS HistoryNCBI Gene:258823Re-query CCDS DB by CCDS ID:23061.1Re-query CCDS DB by GeneID:258823See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23061.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074566.1 ENSMUSP00000074151.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074566.1Link to Ensembl Protein Viewer:ENSMUSP00000074151.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000074566Re-query CCDS DB by Protein ID:ENSMUSP00000074151
Original member Current member EBI ENSMUST00000213266.1 ENSMUSP00000149551.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213266.1Link to Ensembl Protein Viewer:ENSMUSP00000149551.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213266Re-query CCDS DB by Protein ID:ENSMUSP00000149551
Original member Current member NCBI NM_146826.1 NP_667037.1 Accepted alive Link to Nucleotide Sequence:NM_146826.1Link to Protein Sequence:NP_667037.1Re-query CCDS DB by Nucleotide ID:NM_146826Re-query CCDS DB by Protein ID:NP_667037Link to BLAST:NP_667037.1

Chromosomal Locations for CCDS 23061.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 39795377 39796312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGTTAAAAGGAAATCTTTCCGAAGTGACTGAGTTCATCCTCGCTGGGTTAACAAACAAACCAGAGCTGC
AG
CTGCCCCTCTTCTTCCTCTTTCTAGCAATCTATGTGGTCACAGTGGTGGGGAATCTGGGCATGATCAC
T
CTGATACTATTCAGTTCTCAACTGCACACACCCATGTACTTTTTTCTCAGCAGTCTGTCCTTCATTGAC
CTC
TGCCAGTCCACTGTCATTATTCCCAAAATGCTGGTGAACTTTGTGACAGTGAAGAACATCATCTCCT
AT
CCTGAATGCATGACTCAGCTCTACTTTTTTGTTACTTTTGCTATTGCAGAGTGTCACATGTTAGCTGT
A
ATGGCATATGATCGCTATGTTGCCATCGGTAACCCCTTGCTTTACAATATTATGATGTCCTATCGAGTC
TGT
TCTTGGATGATATTTGGAGTATATATTATGGCTTTTATTGGTGCCACATCTCACACAGTCTGCATGT
TA
AGAGTGCATTTCTGTAAGACTGATGTAATAAATCATTACTTTTGTGATATTTATCCACTACTGGAACT
C
TCTTGTTCTGATACCTTTATTAATGAAGTAGTACTTTTATGTTTCAGTGTTTTTAACTTCTTGATTCCA
ACT
CTGACAATTCTAAGCTCTTACATCTTCATCATAGCCAGCATCCTCCGGATTAAATCCACTGAAGGCA
GG
TACAAAGCCTTCAGCACCTGCAGCTCACACATCTCTGCAGTTGCTATCTTCTTTGGGTCTACTGCATT
T
ATGTACTTGCAGCCATCTTCGGTCAACTCTATGGATCAAGGGAAAGTGTCTTCTGTATTTTATAGCATT
GTT
GTGCCCATGCTGAACCCTTTGATCTACAGCCTGAGAAATAAGGATGTCAAAGTTGCTCTAAATAAGT
TC
TTTGAAAGAAAGTTTTTCTTGTGA


Translation (311 aa):
MLKGNLSEVTEFILAGLTNKPELQLPLFFLFLAIYVVTVVGNLGMITLILFSSQLHTPMYFFLSSLSFID
L
CQSTVIIPKMLVNFVTVKNIISYPECMTQLYFFVTFAIAECHMLAVMAYDRYVAIGNPLLYNIMMSYRV
C
SWMIFGVYIMAFIGATSHTVCMLRVHFCKTDVINHYFCDIYPLLELSCSDTFINEVVLLCFSVFNFLIP
T
LTILSSYIFIIASILRIKSTEGRYKAFSTCSSHISAVAIFFGSTAFMYLQPSSVNSMDQGKVSSVFYSI
V
VPMLNPLIYSLRNKDVKVALNKFFERKFFL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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