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Report for CCDS36304.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36304.1 Public Mus musculus 11 Rara 23 108 98 CCDS HistoryNCBI Gene:19401Re-query CCDS DB by CCDS ID:36304.1Re-query CCDS DB by GeneID:19401See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36304.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068133.9 ENSMUSP00000069744.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068133.9Link to Ensembl Protein Viewer:ENSMUSP00000069744.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000068133Re-query CCDS DB by Protein ID:ENSMUSP00000069744
Original member Current member EBI ENSMUST00000107474.7 ENSMUSP00000103098.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107474.7Link to Ensembl Protein Viewer:ENSMUSP00000103098.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107474Re-query CCDS DB by Protein ID:ENSMUSP00000103098
Original member Current member EBI ENSMUST00000107475.8 ENSMUSP00000103099.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107475.8Link to Ensembl Protein Viewer:ENSMUSP00000103099.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107475Re-query CCDS DB by Protein ID:ENSMUSP00000103099
Original member Current member EBI ENSMUST00000164748.7 ENSMUSP00000129791.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164748.7Link to Ensembl Protein Viewer:ENSMUSP00000129791.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164748Re-query CCDS DB by Protein ID:ENSMUSP00000129791
Original member Current member NCBI NM_001177302.1 NP_001170773.1 Accepted alive Link to Nucleotide Sequence:NM_001177302.1Link to Protein Sequence:NP_001170773.1Re-query CCDS DB by Nucleotide ID:NM_001177302Re-query CCDS DB by Protein ID:NP_001170773Link to BLAST:NP_001170773.1
Original member Current member NCBI NM_001177303.1 NP_001170774.1 Accepted alive Link to Nucleotide Sequence:NM_001177303.1Link to Protein Sequence:NP_001170774.1Re-query CCDS DB by Nucleotide ID:NM_001177303Re-query CCDS DB by Protein ID:NP_001170774Link to BLAST:NP_001170774.1
Original member Current member NCBI NM_009024.2 NP_033050.2 Accepted alive Link to Nucleotide Sequence:NM_009024.2Link to Protein Sequence:NP_033050.2Re-query CCDS DB by Nucleotide ID:NM_009024Re-query CCDS DB by Protein ID:NP_033050Link to BLAST:NP_033050.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001170773.1 462 P11416-1 462 100% 0 0
NP_001170774.1 462 P11416-1 462 100% 0 0
NP_033050.2 462 P11416-1 462 100% 0 0

Chromosomal Locations for CCDS 36304.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 98950618 98950795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98966347 98966495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98968045 98968186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98970157 98970317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98970493 98970669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98971582 98971786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98972512 98972670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98973420 98973637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1389 nt):
ATGGCCAGCAATAGCAGTTCCTGCCCAACACCTGGGGGCGGGCACCTCAATGGGTACCCAGTACCCCCCT
ACGCCTTCTTCTTTCCCCCTATGCTGGGTGGACTCTCCCCACCCGGCGCTCTCACCAGCCTCCAGCACCA
GCTTCCAGTCAGTGGTTACAGCACACCGTCCCCAGCCACCATCGAGACCCAGAGCAGCAGTTCCGAAGAG
ATAGTACCCAGCCCTCCCTCACCACCGCCCCTGCCCCGCATCTACAAGCCTTGCTTTGTTTGTCAAGACA
AATCATCCGGCTACCACTATGGGGTCAGCGCCTGTGAGGGCTGTAAGGGCTTCTTCCGACGAAGCATCCA
GAAGAACATGGTGTATACGTGTCACCGGGACAAGAACTGCATCATCAACAAGGTGACCCGGAACCGCTGC
CAGTACTGCCGGCTGCAGAAATGTTTCGACGTGGGCATGTCCAAGGAGTCGGTGCGAAACGATCGAAACA
AAAAGAAGAAAGAGGCACCCAAGCCCGAGTGCTCAGAGAGCTACACGCTGACGCCTGAGGTGGGCGAGCT
CATTGAGAAGGTTCGCAAAGCGCACCAGGAGACCTTCCCGGCCCTCTGCCAGCTGGGCAAGTACACTACG
AACAACAGCTCAGAACAACGAGTCTCCCTGGACATTGACCTCTGGGACAAGTTCAGTGAACTCTCCACCA
AGTGCATCATTAAGACTGTGGAGTTCGCCAAGCAGCTTCCCGGCTTCACCACCCTCACCATCGCCGACCA
GATCACCCTCCTCAAGGCTGCCTGCCTGGATATCCTGATTCTGCGAATCTGCACGCGGTACACGCCTGAG
CAAGACACAATGACCTTCTCAGATGGACTGACCCTGAACCGGACTCAGATGCACAACGCTGGCTTTGGCC
CCCTCACCGACTTGGTCTTTGCCTTCGCCAACCAGCTGCTGCCCCTGGAGATGGACGATGCTGAGACTGG
ACTGCTCAGTGCCATCTGCCTCATCTGTGGAGACCGACAGGACCTGGAGCAGCCAGACAAGGTGGACATG
CTGCAAGAGCCGCTGCTGGAAGCACTGAAAGTCTACGTCCGGAAACGGAGGCCCAGCCGACCCCACATGT
TCCCCAAGATGCTGATGAAGATCACAGACCTTCGGAGCATCAGCGCCAAGGGAGCTGAACGGGTGATCAC
ATTGAAGATGGAGATCCCAGGCTCCATGCCACCGCTGATCCAGGAAATGCTGGAGAACTCTGAGGGCTTG
GACACTCTAAGCGGACAGTCGGGGGGCGGAACACGAGATGGGGGTGGCCTGGCCCCCCCTCCGGGTAGCT
GTAGCCCCAGCCTCAGTCCCAGCTCCCACAGAAGCAGCCCAGCCACCCAATCCCCATGA

Translation (462 aa):
MASNSSSCPTPGGGHLNGYPVPPYAFFFPPMLGGLSPPGALTSLQHQLPVSGYSTPSPATIETQSSSSEE
IVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRC
QYCRLQKCFDVGMSKESVRNDRNKKKKEAPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLGKYTT
NNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPE
QDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDKVDM
LQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGL
DTLSGQSGGGTRDGGGLAPPPGSCSPSLSPSSHRSSPATQSP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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