NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS85905.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85905.1 Public Mus musculus Y Gm20806 23 108 98 CCDS HistoryNCBI Gene:100039574Re-query CCDS DB by CCDS ID:85905.1Re-query CCDS DB by GeneID:100039574See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85905.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000180324.1 ENSMUSP00000136000.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180324.1Link to Ensembl Protein Viewer:ENSMUSP00000136000.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180324Re-query CCDS DB by Protein ID:ENSMUSP00000136000
Original member Current member EBI ENSMUST00000190349.1 ENSMUSP00000141047.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000190349.1Link to Ensembl Protein Viewer:ENSMUSP00000141047.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000190349Re-query CCDS DB by Protein ID:ENSMUSP00000141047
Original member Current member NCBI NM_001160135.2 NP_001153607.2 Accepted alive Link to Nucleotide Sequence:NM_001160135.2Link to Protein Sequence:NP_001153607.2Re-query CCDS DB by Nucleotide ID:NM_001160135Re-query CCDS DB by Protein ID:NP_001153607Link to BLAST:NP_001153607.2

Chromosomal Locations for CCDS 85905.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome Y (NC_000087.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 78835860 78836543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGACATCACTCAAGAAGAAGAGTAGGAGGAAGCCTTCTTCCCAGGCCCTGGGGAATATTGTTGGCTGCA
GAATTTCTCACGGGTGGAAGGAAGGTAATGAGCCTGTCACCCATTGGAAGGCCATCATTCTAGGTCAACT
GCCAACAAACCCTTCTCTTTATTTGGTGAAGTATGACGGAATTGACAGTGTCTACGGACAGGAGCTCCAC
AGCGATGAGAGGATTTTAAATCTTAAGGTCTTGCCTCACAAAGTAGTTTTTCCTCAGGTGAGGGATGTCC
ACCTCGCAGGCGCACTGGTTGGCAGAGAGGTACAACACAAATTTGAGGGGAAAGATGGCTCTGAGGACAA
CTGGAGTGGGATGGTGCTAGCCCAGGTGCCATTCTTACAGGACTATTTTTACATTTCCTACAAGAAGGAT
CCGGTCCTCTACGTCTATCAGCTCCTGGATGACTACAAGGAAGGTAACCTCCACATCATTCCAGAGACCC
CTCTGGCTGAGGCGAGATCAGGTGATGACAATGACTTCTTAATAGGTTCCTGGGTGCAGTACACCAGAGA
TGATGGATCCAAAAAGTTCGGAAAGGTTGTTTACAAAGTTCTAGCCAATCCTACTGTGTACTTTATCAAA
TTTCTCGGTGACCTCCATATCTATGTCTATACTCTGGTGTCAAATATCACTTAA

Translation (227 aa):
MTSLKKKSRRKPSSQALGNIVGCRISHGWKEGNEPVTHWKAIILGQLPTNPSLYLVKYDGIDSVYGQELH
SDERILNLKVLPHKVVFPQVRDVHLAGALVGREVQHKFEGKDGSEDNWSGMVLAQVPFLQDYFYISYKKD
PVLYVYQLLDDYKEGNLHIIPETPLAEARSGDDNDFLIGSWVQYTRDDGSKKFGKVVYKVLANPTVYFIK
FLGDLHIYVYTLVSNIT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH