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Report for CCDS78619.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78619.1 Public Mus musculus 1 Zfp142 23 108 98 CCDS HistoryNCBI Gene:77264Re-query CCDS DB by CCDS ID:78619.1Re-query CCDS DB by GeneID:77264See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78619.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027315.13 ENSMUSP00000027315.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027315.13Link to Ensembl Protein Viewer:ENSMUSP00000027315.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027315Re-query CCDS DB by Protein ID:ENSMUSP00000027315
Original member Current member NCBI NM_001310668.1 NP_001297597.1 Accepted alive Link to Nucleotide Sequence:NM_001310668.1Link to Protein Sequence:NP_001297597.1Re-query CCDS DB by Nucleotide ID:NM_001310668Re-query CCDS DB by Protein ID:NP_001297597Link to BLAST:NP_001297597.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297597.1 1843 G5E869-1 1843 100% 0 0

Chromosomal Locations for CCDS 78619.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 74566878 74567347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74568551 74568656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74569679 74572583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74573539 74573716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74575780 74576604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74578123 74578287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74579325 74579927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74585384 74585663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5532 nt):
ATGACAGACCCTGTGTTGGCATCCCAGCTGGCTAATGGCACTGGGGAGATGGATGGACTGTGCTCTGAAC
TATTGTTGATTCCCCCACCTCTCTCAAACCATGGAATCCTGGGCCCTGTCCAGAATACCTGTGCTTCTGG
GGAGCTTGCACCTTTGCCTGCTGACCCAGGCTGCCTGCTGGTAGAGGCCACAGCTACTGAAGAGGGTCCA
GGGAACATGGAGATCATTGTGGAAGCAGTAACTGGAACTCTGTCCCCAGGAGCTCCTGAAGAGACCTCAG
GTGTCCTGGTAAAGGTGGTGGAGGTATACTTCTGTGAGCGCTGTGAACAGAGCTTTGCAGAGCCTACTCT
GCTCTCCGTGCACCAGTGCACTGAGACCCATATTCAGGCTGTGCAGGACCTCTCTAGTCCCCCATGCTCT
GTAGAGCTGCCCCCCAGCAACCTTGCCCTCCGTGGCCCTCTGCAGGACCCCAGCCTGCCAGATAGCCCCC
TACCATGTCCTGTATGTAGACAAGAGTTTGTCCAACCCCAGGCCTTGAAGAGCCACTTCAAGATTCACCG
GGTCACTCCCAACATGTTCTCCTGCCCAGAGTCTGGCTGTGTGTTCTCTGCTGAAGATCGCAAGGGTCTG
CAGAATCACCTGAGACAGACCCACAAGGCAGTTCCTGTGCCCTGTTCATTCCGGGGCTGCTCCCTGCTTT
TTGGGAGTCAGCAGGGAATGGAGCTGCATCGGCAGGCCCATTACCCTTTCCACTGCAGCCATTGCAGCTT
CATGGGCTCCAACGTCAAACTATTCCGGCAGCATCAGCGGAGCCATGGAGCCAGTGCACGGGGAGAACTT
TCTGCTGCTGTTCAGGGCCTTCCATCCCAGGAGCTACTGCCAGCTGCCAAACTGCCTCCGGGACACAGAG
AACCTTCTGAGGAAGCAAGTACACCTTTGCCTGGGCAGGAGTCAGCTGAAGAGGAGGATGCAGAGGAAGA
GGAGAGCGTCACCCAAAAAGACTCCCAGAAAGTCATGGATAAAAGCCAAGGGGCTCAGCAGTTGGAAGGG
CATGTGGGTTCAGGCACTGAGTCTCTCTTCAAGACACACATGTGCCCAGAATGCAAGCGCTGCTTTAAGA
AGCGGACCCATTTGGTAGAGCACCTACATCTGCACTTTCCAGACCCAAGCCTCCAGTGTCCTAACTGCCA
GAAGTTCTTCACCAGCAAGAGCAAGCTCAAGACCCATCTGCTGCGGGAGCTGGGCGAGAAGGCCCACCGA
TGTCCTCTGTGCCACTACAGTGCAGTAGAGAGGAATGCACTTAACCGCCACATGGCCAGCATGCACGAGG
ATATTTCCAACTTCTACTCAGACACCTATGCCTGTCCCGTCTGTCGTGAGGAATTCCGCCTCAGCCAAGC
ACTCAAGGAGCACCTCAAAAGCCACACAGCAGCAGCTGCAGCAGAACCATTACCCCTACACTGCTTTCAG
GAGGGCTGCACATATGTAGCACCTGACCGTAAGGCCTTCTTAAAGCACCTAAAGGAGATCCATGGAGTAC
GGGCTGTGGAGTGCCGCCATCACTCGTGTCCCATGCTTTTTGCCACAGCTGAAGCCATGGAAGCCCACCA
CAAGAGCCATTATGCTTTCCACTGTCCCCACTGTGACTTTGCCTGCTCCAATAAGCACTTGTTCCGCAAA
CATAAGAAACAAGGTCACCCAGGCAGTGAAGAGCTACGGTGCACCTTCTGTCCCTTTGCCACCTTCAACC
CAGTAGCCTACCAGGACCACGTTGGCAAGATGCATGCTTATGAGAAGATCCACCAGTGCTCTGAATGTAA
CTTTGCCACTGCCCACAAAAGGGTGCTTATCCGACACATGCTGCTGCATACTGGAGAGAAGCCTCACAAA
TGTGAGCTCTGTGACTTCACATGCCGAGATGTTAGCTACCTATCGAAGCACATGCTGACCCACTCCAACA
CCAAGGATTACATGTGTACTGAATGTGGCTATGTCACCAAGTGGAAGCACTACCTGAGTGTGCACATGCG
GAAACATGCAGGGGATCTCAGATACCAATGCAACCAGTGCTCCTACCGCTGCCATCGAGCTGATCAGCTG
AGCAGCCACAAACTACGGCACCAGGGCAAGTCCCTCATGTGTGAGGTGTGTGCCTTTGCCTGCAAGCGGA
AGTATGAGCTACAGAAGCACATGGCTTCCCAGCACCACCCTGGCACACCTGCCCCACTCTACCCCTGCCG
CTATTGTAGCTATCAGAGCCGCCACAAGCAGGCCCTCCTGAGCCATGAGAACTGCAAGCACACCCATCTC
CGTGAGTTTCACTGCGCCCTCTGTGACTACCGTACCTTTAGCAATACCACACTCTTCTTCCACAAGCGTA
AGGTCCATGGCTACATGCCAGGGGACCAGGTTTGGCAGTTCTGCAATGCTAGCCAAGAGTTGGAGGGGGC
TAGGCAGTGCCTGGCACCTCCTTCAGACTCAGGACCTTCAAGCCAGCTGTCTGCCCAGCCTGAGAGAGAA
GACCGTGAACATGAAATTGTGGCTAACTCCAATATGGACCAGGCCCTGCCAGAGACAAATGAGGAGGCCA
GCCCCAAAAGACAAGATGGCATTGAGGCTCCCCAAGAGGATGATCAGGTTGACAGCCCCAGCCTGGGGGA
GGTGGAAGAGGGTGGCTGCACACTACACTTGGAGGCCCTGAGAGTAGAGCTAGAACCTGAGACTGAGCCA
CTACCCCTTGAGGAGCTCACCGAAACAGCCACTGTGGAGTTCAGGCCTCTGGATCCCTCAGGACCATTGG
GAACAGAAAGACCAGGTGGACTAGAAGAGCCAGCACTGTCCAGCTTTGACAGTATTGAGACGCCTGCCTT
GGTTGCTGAAGAAGAGCCCGTTGTGGAGAAGCTAGCCTCTGAGCCTCCCAGAAATCCCCTAATTTCTGAA
GAAGCACCTAATACATTCAAGGCAGCTCTGACTGCTGAGACTGTACCGTTGCCTCCATTTCCTGAGTCAG
AGTCGCTACTTAAGGCCATGAGGAGACAGGACAAAGAACAAGCAGAAGCGTTGGTGTTGGAGGGCCGGGT
ACAAATGGTCGTGATCCAGGGAGAAGGAAGAGCCTTCCGCTGCCCACACTGTCCTTTTATCACTCGCCGG
GAAAAAGCCCTAACTCTGCACTCCAAATCGGGGTGCCAAGGTCGCCGAGAGCCCCTGCTATGCCCTGAGT
GTGGAGCTAGCTTTAAGCAACAGCGGGGCCTCAGCACCCACATGATGAAGAAATGCCCTGTTCTTCTCAA
AAAGAACAAGGCTTTGCCCAAACCTGTCTCTCCCACTCTACATCCTCAGCTCCCAGATAACCAAGCCTCA
CAGGATGCTGAAAGTAGGAAGCCCCCACCTTTACCATCAAAGGTAGAGCTCTTGCTTCCAAAAGATGCTC
CTTCTGACCTCCCTGGGGGGCCAGGAGTAGAGGAACCTCTTCCCACACCCTCTGACTTCCCAACCTCTCC
ACCAGAAAACTCCTTACCCACAGGGACCTCTGAGAAGTTCCACTTTGAGCAAGGCAAGTTTCACTGCAGC
TCGTGTACATTCCTTTGTTCTCGGCTTTCTTCTATTACCTCTCATGTGACTGAAGGCTGTAGAGGGGGGC
GTGGCCAGAAAAGAAAGCGTGGGCGCCCCCAGACCCATGCAGTTGTGCTTCCTCTTAACAATGGGGACTC
TACCCTCCTGAATACTGGAAGTACAGAGTCCAGTCCTAGTGATGGGGACACAGCTGTGGTTCAGAAGCAA
AAGGGTGCCCTCTTCTCCTGCCCCACATGTCCCTTTAGCTGTCAGCAGGAAAGGACCCTGAGGACTCACC
AGACCCAGGGCTGCCCCCTTAAGTCTGGAGATCTGCACTGTGGTCTCTGCCCATTCACTGCTCCTGCTGC
TGCTGCCCTGAGGCTCCATCAAAAACGGAGGCATCCCACTGCATCCCCAGCCTCTGGCCCCCGGCCCCTC
CTGCAGTGTGGGGACTGTGGCTTTACCTGCAAACAAAGCCGGTGCCTTCAGCAGCATCGGCGGCTCAAGC
ATGAGGGTGTGAAGCCACATCAGTGCCCTTTCTGTGACTTTTCTACTACTAGACGGTACCGGTTAGAGGC
CCACCAGTCTCGACACACAGGTGTTGGCCGCATCCCTTGCAGCTCCTGCCCTCAGACATTTGGTACCAAC
TCAAAACTGCGCTTGCATCAACTACGAGTACATGACAAAACACCCACTCACTTCTGTCCACTGTGTGACT
ATAGTGGTTATCTTCGTCATGACATCACTCGCCATGTCAACAGCTGCCACCAGGGCACCCCTTCCTTTTC
CTGCACTCAGTGTGAAGCCCAGTTTAGCTCAGAAACAGCACTCAAGCAGCATGCTCTGCGACGACACCCA
GAACCCACACCTCCTTCCTCTGGCTGTCCTGTAGAGGTCACCGAAGGCCCCTTGCACTGTTCCCACTGTG
GCCTGCTCTGTCCCAGTCCTGCCAGCCTGCGAGGACACACCCGTAAACAGCACCCAAGGCTGGAGTGTGG
GGCCTGCCAGGAGTCCTTCCCTAACCGTCCAGCTCTTGATGAGCATCGGAGGCAACATCATTTCAGCCAC
CGCTGCCAGCTCTGCAGCTTTGCCGCCCGGGAGCGAGTAGGCCTGGTGAAGCACTACCTGGAACAGCACG
AGGAGTCTTCAACAGCCCCCTCAGATGGGGATGCTGGCCAGCCCTCTCTTTGCTGCCCCTTTTGTGACTT
TGCATGTCGCCATCAGTTGGTGCTTGATCACCATGTAAAGGGACATGGAGGTACCCGGCTTTACAAGTGT
ACTGACTGTGCCTATAGCACCAAAAATCGGCAGAAGATCACCTGGCACAGCCGCATTCACACTGGGGAAA
AGCCTTACCACTGTCACCTCTGCGCCTATGCCTGTGCTGACCCTTCCCGCCTCAAGTACCACATGCGGAT
CCATAAGGAGGAACGGAAGTACCTATGCCCTGAGTGTGGGTACAAGTGCAAGTGGGTCAACCAACTCAAA
TACCACATGACCAAGCATACAGGACTGAAGCCTTACCAATGTCCTGAGTGTGAGTACTGCACCAACCGGG
CTGACGCACTGCGGGTACACCGGGAGACACGGCACAGAGAAGCCCGGGCTTTCATGTGTGAGCAGTGTGG
CAAGGCATTCAAGACACGCTTCCTGCTGCGCACCCACCTCCGAAAGCACAGTGAGGCCAAGCCCTATGTT
TGCAATGTTTGCCACCGTGCTTTCCGCTGGGCTGCTGGACTGCGACATCATGCTCTTACCCATACCGATC
GCCACCCATTCTTCTGCCGCCTCTGCAGCTACAAGGCCAAGCAAAAGTTCCAGGTGGTCAAGCATGTGCG
TAGGCACCACCCTGACCAGGCCGACCCCAACCAGGGTGTTGGCAAAGACCCCACCACTCCCACAGTGCAT
CTACATGATGTGAAGCTGGAAGATCCCAGCCCTCCTGCTCCTCCCGCTCCCTCTACTGGACCTGAGGGCT
GA

Translation (1843 aa):
MTDPVLASQLANGTGEMDGLCSELLLIPPPLSNHGILGPVQNTCASGELAPLPADPGCLLVEATATEEGP
GNMEIIVEAVTGTLSPGAPEETSGVLVKVVEVYFCERCEQSFAEPTLLSVHQCTETHIQAVQDLSSPPCS
VELPPSNLALRGPLQDPSLPDSPLPCPVCRQEFVQPQALKSHFKIHRVTPNMFSCPESGCVFSAEDRKGL
QNHLRQTHKAVPVPCSFRGCSLLFGSQQGMELHRQAHYPFHCSHCSFMGSNVKLFRQHQRSHGASARGEL
SAAVQGLPSQELLPAAKLPPGHREPSEEASTPLPGQESAEEEDAEEEESVTQKDSQKVMDKSQGAQQLEG
HVGSGTESLFKTHMCPECKRCFKKRTHLVEHLHLHFPDPSLQCPNCQKFFTSKSKLKTHLLRELGEKAHR
CPLCHYSAVERNALNRHMASMHEDISNFYSDTYACPVCREEFRLSQALKEHLKSHTAAAAAEPLPLHCFQ
EGCTYVAPDRKAFLKHLKEIHGVRAVECRHHSCPMLFATAEAMEAHHKSHYAFHCPHCDFACSNKHLFRK
HKKQGHPGSEELRCTFCPFATFNPVAYQDHVGKMHAYEKIHQCSECNFATAHKRVLIRHMLLHTGEKPHK
CELCDFTCRDVSYLSKHMLTHSNTKDYMCTECGYVTKWKHYLSVHMRKHAGDLRYQCNQCSYRCHRADQL
SSHKLRHQGKSLMCEVCAFACKRKYELQKHMASQHHPGTPAPLYPCRYCSYQSRHKQALLSHENCKHTHL
REFHCALCDYRTFSNTTLFFHKRKVHGYMPGDQVWQFCNASQELEGARQCLAPPSDSGPSSQLSAQPERE
DREHEIVANSNMDQALPETNEEASPKRQDGIEAPQEDDQVDSPSLGEVEEGGCTLHLEALRVELEPETEP
LPLEELTETATVEFRPLDPSGPLGTERPGGLEEPALSSFDSIETPALVAEEEPVVEKLASEPPRNPLISE
EAPNTFKAALTAETVPLPPFPESESLLKAMRRQDKEQAEALVLEGRVQMVVIQGEGRAFRCPHCPFITRR
EKALTLHSKSGCQGRREPLLCPECGASFKQQRGLSTHMMKKCPVLLKKNKALPKPVSPTLHPQLPDNQAS
QDAESRKPPPLPSKVELLLPKDAPSDLPGGPGVEEPLPTPSDFPTSPPENSLPTGTSEKFHFEQGKFHCS
SCTFLCSRLSSITSHVTEGCRGGRGQKRKRGRPQTHAVVLPLNNGDSTLLNTGSTESSPSDGDTAVVQKQ
KGALFSCPTCPFSCQQERTLRTHQTQGCPLKSGDLHCGLCPFTAPAAAALRLHQKRRHPTASPASGPRPL
LQCGDCGFTCKQSRCLQQHRRLKHEGVKPHQCPFCDFSTTRRYRLEAHQSRHTGVGRIPCSSCPQTFGTN
SKLRLHQLRVHDKTPTHFCPLCDYSGYLRHDITRHVNSCHQGTPSFSCTQCEAQFSSETALKQHALRRHP
EPTPPSSGCPVEVTEGPLHCSHCGLLCPSPASLRGHTRKQHPRLECGACQESFPNRPALDEHRRQHHFSH
RCQLCSFAARERVGLVKHYLEQHEESSTAPSDGDAGQPSLCCPFCDFACRHQLVLDHHVKGHGGTRLYKC
TDCAYSTKNRQKITWHSRIHTGEKPYHCHLCAYACADPSRLKYHMRIHKEERKYLCPECGYKCKWVNQLK
YHMTKHTGLKPYQCPECEYCTNRADALRVHRETRHREARAFMCEQCGKAFKTRFLLRTHLRKHSEAKPYV
CNVCHRAFRWAAGLRHHALTHTDRHPFFCRLCSYKAKQKFQVVKHVRRHHPDQADPNQGVGKDPTTPTVH
LHDVKLEDPSPPAPPAPSTGPEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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