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Report for CCDS38496.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38496.1 Public Mus musculus 3 Il6ra 23 108 98 CCDS HistoryNCBI Gene:16194Re-query CCDS DB by CCDS ID:38496.1Re-query CCDS DB by GeneID:16194See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38496.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029559.6 ENSMUSP00000029559.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029559.6Link to Ensembl Protein Viewer:ENSMUSP00000029559.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000029559Re-query CCDS DB by Protein ID:ENSMUSP00000029559
Original member Current member NCBI NM_010559.3 NP_034689.2 Accepted alive Link to Nucleotide Sequence:NM_010559.3Link to Protein Sequence:NP_034689.2Re-query CCDS DB by Nucleotide ID:NM_010559Re-query CCDS DB by Protein ID:NP_034689Link to BLAST:NP_034689.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034689.2 460 P22272 460 100% 0 0

Chromosomal Locations for CCDS 38496.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 89871161 89871386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89876809 89876908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89877844 89877913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89878849 89878895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89885902 89886043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89886542 89886708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89887022 89887206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89889187 89889310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89890237 89890473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89912955 89913039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1383 nt):
ATGCTGACCGTCGGCTGCACGCTGTTGGTCGCCCTGCTGGCCGCGCCCGCGGTCGCGCTGGTCCTCGGGA
GCTGCCGCGCGCTGGAGGTGGCAAATGGCACAGTGACAAGCCTGCCAGGGGCCACCGTTACCCTGATTTG
CCCCGGGAAGGAAGCAGCAGGCAATGTTACCATTCACTGGGTGTACTCTGGCTCACAAAACAGAGAATGG
ACTACCACAGGAAACACACTGGTTCTGAGGGACGTGCAGCTCAGCGACACTGGGGACTATTTATGCTCCC
TGAATGATCACCTGGTGGGGACTGTGCCCTTGCTGGTGGATGTTCCCCCAGAGGAGCCCAAGCTCTCCTG
CTTCCGGAAGAACCCCCTTGTCAACGCCATCTGTGAGTGGCGTCCGAGCAGCACCCCCTCTCCAACCACG
AAGGCTGTGCTGTTTGCAAAGAAAATCAACACCACCAACGGGAAGAGTGACTTCCAGGTGCCCTGTCAGT
ATTCTCAGCAGCTGAAAAGCTTCTCCTGCCAGGTGGAGATCCTGGAGGGTGACAAAGTATACCACATAGT
GTCACTGTGCGTTGCAAACAGTGTGGGAAGCAAGTCCAGCCACAACGAAGCGTTTCACAGCTTAAAAATG
GTGCAGCCGGATCCACCTGCCAACCTTGTGGTATCAGCCATACCTGGAAGGCCGCGCTGGCTCAAAGTCA
GCTGGCAGCACCCTGAGACCTGGGACCCGAGTTACTACTTGCTGCAGTTCCAGCTTCGATACCGACCTGT
ATGGTCAAAGGAGTTCACGGTGTTGCTGCTCCCGGTGGCCCAGTACCAATGCGTCATCCATGATGCCTTG
CGAGGAGTGAAGCACGTGGTCCAGGTCCGTGGGAAGGAGGAGCTTGACCTTGGCCAGTGGAGCGAATGGT
CCCCAGAGGTCACGGGCACTCCTTGGATAGCAGAGCCCAGGACCACCCCGGCAGGAATCCTCTGGAACCC
CACACAGGTCTCTGTTGAAGACTCTGCCAACCACGAGGATCAGTACGAAAGTTCTACAGAAGCAACGAGT
GTCCTCGCCCCAGTGCAAGAATCCTCGTCCATGTCCCTGCCCACATTCCTGGTAGCTGGAGGAAGCTTGG
CGTTTGGGTTGCTTCTCTGTGTCTTCATCATCCTGAGACTCAAGCAGAAATGGAAGTCAGAGGCTGAGAA
GGAAAGCAAGACGACCTCTCCTCCACCCCCACCGTATTCCTTGGGCCCACTGAAGCCGACCTTCCTTCTG
GTTCCTCTCCTCACCCCACACAGCTCTGGGTCTGACAATACCGTAAACCACAGCTGCCTGGGTGTCAGGG
ACGCACAGAGCCCTTATGACAACAGCAACAGAGACTACTTATTCCCCAGATAA

Translation (460 aa):
MLTVGCTLLVALLAAPAVALVLGSCRALEVANGTVTSLPGATVTLICPGKEAAGNVTIHWVYSGSQNREW
TTTGNTLVLRDVQLSDTGDYLCSLNDHLVGTVPLLVDVPPEEPKLSCFRKNPLVNAICEWRPSSTPSPTT
KAVLFAKKINTTNGKSDFQVPCQYSQQLKSFSCQVEILEGDKVYHIVSLCVANSVGSKSSHNEAFHSLKM
VQPDPPANLVVSAIPGRPRWLKVSWQHPETWDPSYYLLQFQLRYRPVWSKEFTVLLLPVAQYQCVIHDAL
RGVKHVVQVRGKEELDLGQWSEWSPEVTGTPWIAEPRTTPAGILWNPTQVSVEDSANHEDQYESSTEATS
VLAPVQESSSMSLPTFLVAGGSLAFGLLLCVFIILRLKQKWKSEAEKESKTTSPPPPPYSLGPLKPTFLL
VPLLTPHSSGSDNTVNHSCLGVRDAQSPYDNSNRDYLFPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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