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Report for CCDS30141.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30141.1 Public Mus musculus X 3830403N18Rik 23 108 98 CCDS HistoryNCBI Gene:70691Re-query CCDS DB by CCDS ID:30141.1Re-query CCDS DB by GeneID:70691See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 30141.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033458.2 ENSMUSP00000033458.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033458.2Link to Ensembl Protein Viewer:ENSMUSP00000033458.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000033458Re-query CCDS DB by Protein ID:ENSMUSP00000033458
Original member Current member NCBI NM_027510.2 NP_081786.1 Accepted alive Link to Nucleotide Sequence:NM_027510.2Link to Protein Sequence:NP_081786.1Re-query CCDS DB by Nucleotide ID:NM_027510Re-query CCDS DB by Protein ID:NP_081786Link to BLAST:NP_081786.1

Chromosomal Locations for CCDS 30141.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 56138027 56138096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56138411 56138474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56138745 56138779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56147076 56147193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56147888 56147987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56152655 56152753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56153073 56153213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGGAAAACTGGGATTTGTCAAGTGATGAAAAGCAAGATTGGAATGCTCCAGAATTGGACCTTATTGAAG
AACAGAATCCAGTAACTCATGATGATGAGAATGCAAATCCTGAAGAAGTAGTTGGAGATACACGATCTCC
AGTACAAAATATTCTGGGAAAATTTGAAGGTGACATTAACAAGACGCTTCACATAAAAAGAAAACGCATG
GAAACTTATATCAAAGATTCTTTCAAAGACAGCAACCAGAAATTAGAACAACTTTGGAAAACGAACAAAC
AGGAGAGAAAGAAGATTAACAACAAATTTTGTGAGCAGTATATAACTACATTTCAGAAGTTTGATATGGA
TGTCCAGAAATTCAATGAAGAACAAGAAAAATCAGTGAACAATTATCAAAAGGAAGAACAAGCATTAAAA
CTGTCCAAATGTAGTCAGAGCCAGACTCTGGAAGCAATTAAAGACATGCATGAGAAGTACATGGAGGGTC
TGATGAACTTGGAGACCAACAACTACAATGTGCTTTTTGATGTAGATGGTGAACTGAGAAAAGAAATGTC
AGTGTTTAAAAAAGACCTCATGAAGCATACTCTGAAGTACTCTTCTACTTTCCCATCTTCAGACTAA

Translation (208 aa):
MENWDLSSDEKQDWNAPELDLIEEQNPVTHDDENANPEEVVGDTRSPVQNILGKFEGDINKTLHIKRKRM
ETYIKDSFKDSNQKLEQLWKTNKQERKKINNKFCEQYITTFQKFDMDVQKFNEEQEKSVNNYQKEEQALK
LSKCSQSQTLEAIKDMHEKYMEGLMNLETNNYNVLFDVDGELRKEMSVFKKDLMKHTLKYSSTFPSSD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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