NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26764.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26764.1 Public Mus musculus 13 Rab3c 23 108 98 CCDS HistoryNCBI Gene:67295Re-query CCDS DB by CCDS ID:26764.1Re-query CCDS DB by GeneID:67295See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26764.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167824.2 ENSMUSP00000132945.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167824.2Link to Ensembl Protein Viewer:ENSMUSP00000132945.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167824Re-query CCDS DB by Protein ID:ENSMUSP00000132945
Original member Current member NCBI NM_023852.5 NP_076341.1 Accepted alive Link to Nucleotide Sequence:NM_023852.5Link to Protein Sequence:NP_076341.1Re-query CCDS DB by Nucleotide ID:NM_023852Re-query CCDS DB by Protein ID:NP_076341Link to BLAST:NP_076341.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076341.1 227 P62823 227 100% 0 0

Chromosomal Locations for CCDS 26764.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 110061815 110062002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 110084130 110084254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 110180979 110181097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 110260479 110260706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 110279995 110280018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGAGACACGAGGCGCCCATGCAGATGGCCTCTGCACAAGATGCCAGGTTTGGTCAGAAAGACTCTTCTG
ACCAGAACTTCGACTACATGTTCAAGTTGCTGATCATTGGCAATAGCAGCGTGGGCAAAACATCTTTCCT
GTTCCGTTATGCCGACGATTCCTTTACATCTGCATTCGTCAGCACGGTTGGCATCGATTTCAAAGTAAAA
ACTGTATTCAAAAATGAGAAGAGAATCAAGCTTCAGATTTGGGACACAGCAGGCCAGGAAAGATACAGGA
CCATCACCACAGCCTACTATCGAGGGGCCATGGGCTTCATTTTAATGTATGACATCACAAATGAAGAATC
CTTCAACGCTGTACAAGATTGGTCAACTCAGATCAAAACATACTCTTGGGATAATGCCCAGGTTATCCTG
GCTGGAAACAAATGTGACATGGAAGATGAGCGGGTTGTCTCAACCGAGAGAGGCCAGCGCTTAGGAGAAC
AGCTCGGGTTTGAGTTTTTTGAAACCAGCGCCAAGGATAACATCAACGTGAAGCAAACCTTCGAGCGCCT
CGTAGATATCATTTGTGACAAAATGTCAGAGAGCTTGGAGACCGACCCAGCCATCACAGCGGCAAAGCAG
AGCACGAGGCTCAAGGAGACCCCTCCTCCACCACAGCCCAACTGTGGCTGCTAA

Translation (227 aa):
MRHEAPMQMASAQDARFGQKDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVK
TVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVIL
AGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQ
STRLKETPPPPQPNCGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH