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Report for CCDS22370.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22370.1 Public Mus musculus 8 Rex1bd 23 108 98 CCDS HistoryNCBI Gene:66462Re-query CCDS DB by CCDS ID:22370.1Re-query CCDS DB by GeneID:66462See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22370.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075175.11 ENSMUSP00000074670.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075175.11Link to Ensembl Protein Viewer:ENSMUSP00000074670.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000075175Re-query CCDS DB by Protein ID:ENSMUSP00000074670
Original member Current member NCBI NM_025577.3 NP_079853.1 Accepted alive Link to Nucleotide Sequence:NM_025577.3Link to Protein Sequence:NP_079853.1Re-query CCDS DB by Nucleotide ID:NM_025577Re-query CCDS DB by Protein ID:NP_079853Link to BLAST:NP_079853.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079853.1 169 Q9CYZ6 169 100% 0 0

Chromosomal Locations for CCDS 22370.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 70504437 70504509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70504984 70505060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70505756 70505960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70506497 70506579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70506662 70506733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (510 nt):
ATGCTCACCGCCGCCACAGAGGTGTTGGCTGCTGCAGACGGTCCCGGGTCTGCGGAGTCCGCGTGGGCCT
GGAGAGACGCCCCGATCGCTACACTGGTGCAGAGGATTCAGCAGCTTCAGAATGAACGCGCACAGGCCTT
CCGCCGTCTAGACCAAGCTCACCGTCAGTACCTGCTCAGTGGTCAGCACTATGACTTCCCGAGTTACCGG
AGTGTCGTGCACGAGGTGACCCAGGCCTTCGCCGCTGCCTCGCGGGAGGTATTGGCAGTGGAAGCAGAGT
TGGCAGGGCCTCGAGCGCAACCGGTGCTCGCCCGCCACGTGCGCAGCCTGCAGGAGCTAGAACAGACGCG
CCTGGCCACGGTGGCACTGTTGCAGGTGATGGGGACACCAGGAGTGTCAGAACAGGACCCTGAAAAGTTG
CACCAGCTGAAAATAAAGGTAATTAAAACCATGGAGGCGATCGGCGAGGTTCTGCAGGAACTCAGGTTTG
ATGCGGAATCTGCCGAGTGA

Translation (169 aa):
MLTAATEVLAAADGPGSAESAWAWRDAPIATLVQRIQQLQNERAQAFRRLDQAHRQYLLSGQHYDFPSYR
SVVHEVTQAFAAASREVLAVEAELAGPRAQPVLARHVRSLQELEQTRLATVALLQVMGTPGVSEQDPEKL
HQLKIKVIKTMEAIGEVLQELRFDAESAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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