NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16767.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16767.1 Public Mus musculus 2 Prnd 23 108 98 CCDS HistoryNCBI Gene:26434Re-query CCDS DB by CCDS ID:16767.1Re-query CCDS DB by GeneID:26434See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16767.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110169.1 ENSMUSP00000105798.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110169.1Link to Ensembl Protein Viewer:ENSMUSP00000105798.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110169Re-query CCDS DB by Protein ID:ENSMUSP00000105798
Original member Current member EBI ENSMUST00000110170.7 ENSMUSP00000105799.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110170.7Link to Ensembl Protein Viewer:ENSMUSP00000105799.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110170Re-query CCDS DB by Protein ID:ENSMUSP00000105799
Original member Current member EBI ENSMUST00000110171.8 ENSMUSP00000105800.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110171.8Link to Ensembl Protein Viewer:ENSMUSP00000105800.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110171Re-query CCDS DB by Protein ID:ENSMUSP00000105800
Original member Current member EBI ENSMUST00000110172.8 ENSMUSP00000105801.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110172.8Link to Ensembl Protein Viewer:ENSMUSP00000105801.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110172Re-query CCDS DB by Protein ID:ENSMUSP00000105801
Original member Current member NCBI NM_001126338.2 NP_001119810.1 Accepted alive Link to Nucleotide Sequence:NM_001126338.2Link to Protein Sequence:NP_001119810.1Re-query CCDS DB by Nucleotide ID:NM_001126338Re-query CCDS DB by Protein ID:NP_001119810Link to BLAST:NP_001119810.1
Original member Current member NCBI NM_001278257.1 NP_001265186.1 Accepted alive Link to Nucleotide Sequence:NM_001278257.1Link to Protein Sequence:NP_001265186.1Re-query CCDS DB by Nucleotide ID:NM_001278257Re-query CCDS DB by Protein ID:NP_001265186Link to BLAST:NP_001265186.1
Original member Current member NCBI NM_001278520.1 NP_001265449.1 Accepted alive Link to Nucleotide Sequence:NM_001278520.1Link to Protein Sequence:NP_001265449.1Re-query CCDS DB by Nucleotide ID:NM_001278520Re-query CCDS DB by Protein ID:NP_001265449Link to BLAST:NP_001265449.1
Original member Current member NCBI NM_023043.3 NP_075530.1 Accepted alive Link to Nucleotide Sequence:NM_023043.3Link to Protein Sequence:NP_075530.1Re-query CCDS DB by Nucleotide ID:NM_023043Re-query CCDS DB by Protein ID:NP_075530Link to BLAST:NP_075530.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001119810.1 179 Q9QUG3 179 100% 0 0
NP_001265186.1 179 Q9QUG3 179 100% 0 0
NP_001265449.1 179 Q9QUG3 179 100% 0 0
NP_075530.1 179 Q9QUG3 179 100% 0 0

Chromosomal Locations for CCDS 16767.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 131953016 131953555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (540 nt):
ATGAAGAACCGGCTGGGTACATGGTGGGTGGCCATCCTCTGCATGCTGCTTGCCAGCCACCTCTCCACGG
TCAAGGCAAGGGGCATAAAGCACAGGTTCAAGTGGAACCGGAAGGTCCTGCCCAGCAGCGGCGGCCAGAT
CACCGAAGCTCGGGTAGCTGAGAACCGCCCAGGAGCCTTCATCAAGCAAGGCCGGAAGCTGGACATCGAC
TTTGGAGCAGAGGGCAACAGGTACTACGCGGCTAACTATTGGCAGTTCCCTGATGGGATCTACTACGAAG
GCTGCTCTGAAGCCAACGTGACCAAGGAGATGCTGGTGACCAGCTGCGTCAACGCCACCCAGGCGGCCAA
CCAGGCTGAGTTCTCCCGGGAGAAGCAGGATAGCAAGCTCCACCAGCGAGTCCTGTGGCGGCTGATCAAA
GAGATCTGCTCCGCCAAGCACTGCGATTTCTGGCTGGAAAGGGGAGCTGCGCTTCGGGTCGCCGTGGACC
AACCGGCGATGGTCTGCCTGCTGGGTTTCGTTTGGTTCATTGTGAAGTAA

Translation (179 aa):
MKNRLGTWWVAILCMLLASHLSTVKARGIKHRFKWNRKVLPSSGGQITEARVAENRPGAFIKQGRKLDID
FGAEGNRYYAANYWQFPDGIYYEGCSEANVTKEMLVTSCVNATQAANQAEFSREKQDSKLHQRVLWRLIK
EICSAKHCDFWLERGAALRVAVDQPAMVCLLGFVWFIVK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH