NM_000540.3(RYR1):c.9310G>A (p.Glu3104Lys) AND desflurane response - Toxicity - ClinVar

NM_000540.3(RYR1):c.9310G>A (p.Glu3104Lys) AND desflurane response - Toxicity

Germline classification:: drug response (1 submission)
Last evaluated:: Mar 24, 2021
Review status:: 3 stars out of maximum of 4 stars
reviewed by expert panel

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001788028.9

Allele description [Variation Report for NM_000540.3(RYR1):c.9310G>A (p.Glu3104Lys)]

NM_000540.3(RYR1):c.9310G>A (p.Glu3104Lys)

Gene:

RYR1:ryanodine receptor 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

19q13.2

Genomic location:

Preferred name:

NM_000540.3(RYR1):c.9310G>A (p.Glu3104Lys)

Other names:

NM_000540.3(RYR1):c.9310G>A

HGVS:

NC_000019.10:g.38512321G>A
NG_008866.1:g.83622G>A
NM_000540.3:c.9310G>AMANE SELECT
NM_001042723.2:c.9310G>A
NP_000531.2:p.Glu3104Lys
NP_000531.2:p.Glu3104Lys
NP_001036188.1:p.Glu3104Lys
LRG_766t1:c.9310G>A
LRG_766:g.83622G>A
LRG_766p1:p.Glu3104Lys
NC_000019.9:g.39002961G>A
NM_000540.2:c.9310G>A

Protein change:

E3104K

Links:

PharmGKB: 1449310249PA164749136; PharmGKB: 1449310249PA166131630; PharmGKB: 1449310249PA449461; PharmGKB: 1449310249PA449845; PharmGKB: 1449310249PA450106; PharmGKB: 1449310249PA450434; PharmGKB: 1449310249PA451341; PharmGKB: 1449310249PA451522; dbSNP: rs193922832

NCBI 1000 Genomes Browser:

rs193922832

Molecular consequence:

NM_000540.3:c.9310G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001042723.2:c.9310G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: desflurane response - Toxicity
Identifiers:

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000925546	PharmGKB	reviewed by expert panel (Pharmacogenomics knowledge for personalized medicine)	drug response (Mar 24, 2021) Condition: desflurane response - Toxicity Drug reported used for: Malignant Hyperthermia	germline	curation	PubMed (2) [See all records that cite these PMIDs] 19648156, 22992668 Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000925546

PharmGKB

reviewed by expert panel

(Pharmacogenomics knowledge for personalized medicine)

drug response
(Mar 24, 2021)
Condition: desflurane response - Toxicity
Drug reported used for: Malignant Hyperthermia

germline

curation

PubMed (2)
[See all records that cite these PMIDs]

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	curation

Citations

PubMed

Genetic variation in RYR1 and malignant hyperthermia phenotypes.

Carpenter D, Robinson RL, Quinnell RJ, Ringrose C, Hogg M, Casson F, Booms P, Iles DE, Halsall PJ, Steele DS, Shaw MA, Hopkins PM.

Br J Anaesth. 2009 Oct;103(4):538-48. doi: 10.1093/bja/aep204. Epub 2009 Jul 31.

PubMed [citation]

PMID:: 19648156

Pharmacogenomics knowledge for personalized medicine.

Whirl-Carrillo M, McDonagh EM, Hebert JM, Gong L, Sangkuhl K, Thorn CF, Altman RB, Klein TE.

Clin Pharmacol Ther. 2012 Oct;92(4):414-7. doi: 10.1038/clpt.2012.96. Review.

PubMed [citation]

PMID:: 22992668
PMCID:: PMC3660037

Details of each submission

From PharmGKB, SCV000925546.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	curation	PubMed (2)

Description

PharmGKB Level of Evidence 1A: Level 1A clinical annotations describe variant-drug combinations that have variant-specific prescribing guidance available in a current clinical guideline annotation or an FDA-approved drug label annotation. Annotations of drug labels or clinical guidelines must give prescribing guidance for specific variants (e.g. CYP2C9*3, HLA-B*57:01) or provide mapping from defined allele functions to diplotypes and phenotypes to be used as supporting evidence for a level 1A clinical annotation. Level 1A clinical annotations must also be supported by at least one publication in addition to a clinical guideline or drug label with variant-specific prescribing guidance.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 1, 2024

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