NM_002890.3(RASA1):c.2245C>T (p.Arg749Ter) AND not provided

Germline classification:: Pathogenic (1 submission)
Last evaluated:: Feb 6, 2020
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001572593.11

Allele description [Variation Report for NM_002890.3(RASA1):c.2245C>T (p.Arg749Ter)]

NM_002890.3(RASA1):c.2245C>T (p.Arg749Ter)

Genes:

RASA1:RAS p21 protein activator 1 [Gene - OMIM - HGNC]
CCNH:cyclin H [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

5q14.3

Genomic location:

Preferred name:

NM_002890.3(RASA1):c.2245C>T (p.Arg749Ter)

HGVS:

NC_000005.10:g.87376941C>T
NG_011650.1:g.113608C>T
NM_001364075.2:c.933+18103G>A
NM_002890.3:c.2245C>TMANE SELECT
NM_022650.3:c.1714C>T
NP_002881.1:p.Arg749Ter
NP_072179.1:p.Arg572Ter
NC_000005.9:g.86672758C>T
NM_002890.2:c.2245C>T

Protein change:

R572*

Links:

dbSNP: rs1204340475

NCBI 1000 Genomes Browser:

rs1204340475

Molecular consequence:

NM_001364075.2:c.933+18103G>A - intron variant - [Sequence Ontology: SO:0001627]
NM_002890.3:c.2245C>T - nonsense - [Sequence Ontology: SO:0001587]
NM_022650.3:c.1714C>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001797262	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Pathogenic (Feb 6, 2020)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001797262

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)

Pathogenic
(Feb 6, 2020)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From GeneDx, SCV001797262.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

Not observed at a significant frequency in large population cohorts (Lek et al., 2016); Nonsense variant predicted to result in protein truncation or nonsense mediated decay in a gene for which loss-of-function is a known mechanism of disease; Reported in ClinVar as a pathogenic variant (ClinVar Variant ID# 565648; Landrum et al., 2016); This variant is associated with the following publications: (PMID: 29891884, 24038909, 26969842)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 1, 2024

ClinVar

Relating variation to medicine