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NM_006420.3(ARFGEF2):c.5063C>T (p.Thr1688Ile) AND Intellectual disability

Germline classification:
Likely benign (1 submission)
Last evaluated:
Jan 1, 2019
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001251675.3

Allele description [Variation Report for NM_006420.3(ARFGEF2):c.5063C>T (p.Thr1688Ile)]

NM_006420.3(ARFGEF2):c.5063C>T (p.Thr1688Ile)

Gene:
ARFGEF2:ADP ribosylation factor guanine nucleotide exchange factor 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
20q13.13
Genomic location:
Preferred name:
NM_006420.3(ARFGEF2):c.5063C>T (p.Thr1688Ile)
HGVS:
  • NC_000020.11:g.49028668C>T
  • NG_011490.2:g.111931C>T
  • NM_006420.3:c.5063C>TMANE SELECT
  • NP_006411.2:p.Thr1688Ile
  • NC_000020.10:g.47645205C>T
  • NG_011490.1:g.111931C>T
  • NM_006420.2:c.5063C>T
  • p.Thr1688Ile
Protein change:
T1688I
Links:
dbSNP: rs145439001
NCBI 1000 Genomes Browser:
rs145439001
Molecular consequence:
  • NM_006420.3:c.5063C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Intellectual disability
Synonyms:
Intellectual functioning disability; intellectual disabilities; Intellectual developmental disorder
Identifiers:
MONDO: MONDO:0001071; MeSH: D008607; MedGen: C3714756; Human Phenotype Ontology: HP:0001249

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001427415Centre de Biologie Pathologie Génétique, Centre Hospitalier Universitaire de Lille
no assertion criteria provided
Likely benign
(Jan 1, 2019) 		uniparentalclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not provideduniparentalyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Centre de Biologie Pathologie Génétique, Centre Hospitalier Universitaire de Lille, SCV001427415.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1uniparentalyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 11, 2023