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NM_012186.3(FOXE3):c.423G>A (p.Lys141=) AND multiple conditions

Germline classification:
Benign (1 submission)
Last evaluated:
Jan 25, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000878330.11

Allele description [Variation Report for NM_012186.3(FOXE3):c.423G>A (p.Lys141=)]

NM_012186.3(FOXE3):c.423G>A (p.Lys141=)

Genes:
FOXE3:forkhead box E3 [Gene - OMIM - HGNC]
LINC01389:long intergenic non-protein coding RNA 1389 [Gene - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p33
Genomic location:
Preferred name:
NM_012186.3(FOXE3):c.423G>A (p.Lys141=)
HGVS:
  • NC_000001.11:g.47416738G>A
  • NG_016192.1:g.5667G>A
  • NM_012186.3:c.423G>AMANE SELECT
  • NP_036318.1:p.Lys141=
  • NC_000001.10:g.47882410G>A
  • NM_012186.2:c.423G>A
Links:
dbSNP: rs145081583
NCBI 1000 Genomes Browser:
rs145081583
Molecular consequence:
  • NM_012186.3:c.423G>A - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:
Congenital primary aphakia
Synonyms:
ANTERIOR SEGMENT DYSGENESIS 2; Anterior segment dysgenesis 2, multiple subtypes
Identifiers:
MONDO: MONDO:0012456; MedGen: C1853230; Orphanet: 83461; OMIM: 610256
Name:
Anterior segment dysgenesis
Synonyms:
Ocular anterior segment dysgenesis
Identifiers:
MONDO: MONDO:0019503; MedGen: C1862839; OMIM: PS107250; Human Phenotype Ontology: HP:0007700

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001021218Invitae
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))		Benign
(Jan 25, 2024) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]
PMID:
28492532
PMCID:
PMC5632818

Details of each submission

From Invitae, SCV001021218.6

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 16, 2024