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LINC01389 long intergenic non-protein coding RNA 1389 [ Homo sapiens (human) ]

Gene ID: 102724077, updated on 23-Nov-2021

Summary

Official Symbol
LINC01389provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1389provided by HGNC
Primary source
HGNC:HGNC:50661
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in colon (RPKM 1.3), testis (RPKM 0.5) and 11 other tissues See more
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Genomic context

See LINC01389 in Genome Data Viewer
Location:
1p33
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (47380796..47437317, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (47846468..47902989, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene STIL centriolar assembly protein Neighboring gene cytidine/uridine monophosphate kinase 1 Neighboring gene Sharpr-MPRA regulatory region 7712 Neighboring gene forkhead box E3 Neighboring gene FOXD2 adjacent opposite strand RNA 1 Neighboring gene forkhead box D2 Neighboring gene ribosomal protein L21 pseudogene 24

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126355.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI393217, AL607122, BX102452, DW420503

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    47380796..47437317 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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