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NM_003331.5(TYK2):c.44T>C (p.Val15Ala) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Feb 20, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000482893.3

Allele description

NM_003331.5(TYK2):c.44T>C (p.Val15Ala)

Gene:
TYK2:tyrosine kinase 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19p13.2
Genomic location:
Preferred name:
NM_003331.5(TYK2):c.44T>C (p.Val15Ala)
HGVS:
  • NC_000019.10:g.10378363A>G
  • NG_007872.1:g.7210T>C
  • NM_003331.5:c.44T>CMANE SELECT
  • NP_003322.3:p.Val15Ala
  • LRG_121t1:c.44T>C
  • LRG_121:g.7210T>C
  • NC_000019.9:g.10489039A>G
  • NM_003331.4:c.44T>C
Protein change:
V15A
Links:
dbSNP: rs144960992
NCBI 1000 Genomes Browser:
rs144960992
Molecular consequence:
  • NM_003331.5:c.44T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000573526GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Uncertain significance
(Feb 20, 2017)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000573526.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The V15A variant has not been published in association with Hyper-IgE syndrome or other related Mendelian disorders to our knowledge. It was observed in two heterozygous individuals with acute lymphoblastic leukemia (Kalender et al., 2012; Sanda et al., 2013). The variant is observed in 59/16464 (0.36%) alleles from individuals of South Asian background in the ExAC dataset, including 2 homozygous individuals (Lek et al., 2016). V15A is a conservative amino acid substitution, which is not likely to impact secondary protein structure as these residues share similar properties. This substitution occurs at a position that is not conserved, and in silico analysis predicts this variant likely does not alter the protein structure/function. In summary, based on the currently available information, it is unclear whether this variant is a pathogenic variant or a rare benign variant.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 15, 2021