Conserved Protein Domain Family
CARMIL_C
?
pfam16000: CARMIL_C (this model, PSSM-Id:406410 is obsolete and has been replaced by 464966)
CARMIL C-terminus
This domain is found near to the C-terminus of leucine-rich repeat-containing proteins in the CARMIL family. In leucine-rich repeat-containing protein 16A (LRRC16A) it includes the region responsible for interaction with F-actin-capping protein subunit alpha-2 (CAPZA2).
Links
?
Statistics
?
PSSM-Id: 406410
Aligned: 31 rows
Threshold Bit Score: 192.606
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
?
Aligned Rows:
Download Cn3D
PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection: 
XP_016839711  819 ANEQCPTILEQTVinrdddydenesltLEEHLRGSCKEKNKLSLDFIQSTISEQAGADIINRVNELNLAVAAHISDRITD 898  jewel wasp
XP_020949748  783 tRSLCPQMLQGPR--------------WREQLEGVLVGSRGLPE-----LLPEHLLQDAFTRLRDMRLSVTGTLAESIVA 843  pig
XP_027321735  779 AHNLCPPVLQRSG--------------VRDQLLNAMSERIHLQEHLNLSAVLDQMVTDVFSKLNEIKLSVTAAVADCIVD 844  mallard
XP_017832501  778 TQELCPVAMRVAE--------------GHNKMLSNVAERVTVPRNFIRGALLEQAGQDIQNKLDEVKLSVVTYLTNSIVD 843  white-tufted-...
XP_016284235  767 TQELCPVAMRVAE--------------GHNKMLSSVAERVTVPRNFIRGALLEQAGQDIQNKLDEVKLSVVTYLTNSIVD 832  gray short-ta...
XP_014342943  752 TQELCPNAARSAE--------------GHQKMFSSISDQVTIPRNFVRSVLLEQAGVDIQNKLNEVKLTVVSYLTNSIVD 817  coelacanth
POI29245      785 AHNLCPPMVQKSG--------------ARDQLVNAMSERIHLQEHLSLSAVLDQMVTDVFSKLNEIKLSITAAVADCIVD 850  Chinese bambo...
XP_016156745  779 AQGLCPAVVQKSG--------------VRDQLVNAMSERICLQDHLSLTAVLDQMVTDVFSKLNEIKLSVTAAVADCIVD 844  collared flyc...
XP_030651095  783 ARSLCPQMLQGSS--------------WREQLEGVLAGSRGLPE-----LLPEQLLQDAFTRLRDMRLSITGTLAESIVA 843  northern whit...
XP_025282327  819 tRSLCPQMLQGPR--------------WREQLEGVLVGSRGLPE-----LLPEHLLQDAFTRLRDMRLSVTGTLAESIVA 879  dingo

XP_016839711  899 QVIESLSTSYKSLI-----GE---CEIR-----TRSSTpDVLRPSAGSTS-----SGGGSvigvgtggmslsisagtpvv 960  jewel wasp
XP_020949748  844 QALAGLSAARDRLV-----ES---LAQQat-eaVPPVVpAVEGGDPSPLGpr---------------------------- 886  pig
XP_027321735  845 AVLGDLSAAQCKLA-----ES---LPTHgldllEPAEDdAAALARSRNLS------DLAE-------------------- 890  mallard
XP_017832501  844 EILQELYHSHKSLA-----RH---LTQLrt-lsDPPGG-PGQGQDLSSRGrgrnhDHEE--------------------- 892  white-tufted-...
XP_016284235  833 EILQELYHSHKSLA-----RH---LAQLrt-lsEPPGG-GGPGQEVSSQArgrgrHDHEE-------------------- 882  gray short-ta...
XP_014342943  818 EILQELYLSHKKLS-----RH---MTQIrk-laEQEAGiMGILQDKpgt----nrQREAEd------------------- 865  coelacanth
POI29245      851 AVLGDLMAAQCKLA-----ES---LPTHgpdllEP----AEDDATAPARGrn---------------------------- 890  Chinese bambo...
XP_016156745  845 AVLGDLTIAQYKLAeslskQG---Ldl-----lVPPPEsAEDDATAPARGrn---------------------------- 888  collared flyc...
XP_030651095  844 QALAGLSAARDRLV-----ESlaqQat----vtMPPALpAPDRGEPSLLEpg---------------------------- 886  northern whit...
XP_025282327  880 QALEGLNAARDRLV-----EN---LARQat-vaMPLAIpALDGGETSPLGp----------------------------- 921  dingo

XP_016839711  961 eRTSLVmdededrqsngrdntnsendknhallgkamgrlsneDDSPMldy-------lnlATPhlSNKRKSLHGR----- 1028 jewel wasp
XP_020949748  887 -----------------------------------------qLKDLF-------------FPEe-KEQEDEEDQK----- 906  pig
XP_027321735  891 -KGFVV------------------------------------EEYKM------------------ALRRKNKHFR----- 910  mallard
XP_017832501  893 -TTDDE------------------------------------LGTNI-------------DTM--AIKKQKR-CR----- 914  white-tufted-...
XP_016284235  883 -TTDDE------------------------------------LGTNI-------------DTM--AIKKQK-RCR----- 904  gray short-ta...
XP_014342943  866 -MTDDE------------------------------------LSTSI-------------DTI--AIRRQTVHSR----- 888  coelacanth
POI29245      891 ---psE------------------------------------LTERGfapeeapssllslQYK--MALRRKNKHF----- 924  Chinese bambo...
XP_016156745  889 ---prE------------------------------------LAa--------------eEYK--M--ALRRRNK----- 906  collared flyc...
XP_030651095  887 -----------------------------------------eLEGLF---------------F--PEEKEEEKEK----- 903  northern whit...
XP_025282327  922 ----gE------------------------------------LEGLFfpe-------evkEKQ----------EDeeeqk 944  dingo

XP_016839711 1029 KLRPKS------------V---VDSVeGLSADDIPDL-------------------L---P-SSSSLpkg------qqaE 1064 jewel wasp
XP_020949748  907 DDSPPEkwp------vssH---CLHThSAAEEPEPEL-------------------A-----APGEDaepqagpsargsP 953  pig
XP_027321735  911 SIRPTT------------T---VRSPsELELPASGKA-------------------R---P-AATKDaep---------t 943  mallard
XP_017832501  915 KIRPVS------------A---FISGsPQDMESQLGN-------------------LgipP-GWFSG------------L 947  white-tufted-...
XP_016284235  905 KIRPVS------------A---FISGsPQDMEGQLAG-------------------LgvpP-GWFSA------------L 937  gray short-ta...
XP_014342943  889 KIRPVS------------T---FISMsELDLDRQTLE-------------------S---PsGLLSS------------S 919  coelacanth
POI29245      925 RSIRPT------------Ltv--rSLsELELPAAGKA-------------------R---P-APAKDaep---------s 958  Chinese bambo...
XP_016156745  907 HFRSIR------------PtptVRSVsELEPAAGRAAsglrahrappslspaappaR---P-ASTKDaep---------a 961  collared flyc...
XP_030651095  904 DDSPLQkwpelshglhlvP---FIHSaAEETEPEPEL-------------------A-----APGEDaepqagpsargsP 956  northern whit...
XP_025282327  945 DDSPPQkwpessqclhlvP---STHSaAE--EPEPEL-------------------A-----APGEDaepqagpsargsP 995  dingo

XP_016839711 1065 GASENehsltESlDSVSELPATSgpGQQLQHLVKSRPKRAK--TRAPTRPM---LKP----DQPQSIDGIT---LGEGLD 1132 jewel wasp
XP_020949748  954 SPATPgppadPP--PRMDLPP-A--GQPLRHPTRARPRPRR--QHHHRPPP---GGPqvppALPQEGNGLSa-rVDEGVE 1022 pig
XP_027321735  944 agALPgtpptEA---LMDLPT-A--GERLEHCTKARPRPNR--R--HKQPP---SKPnvqpVVHENSEDRSitrVDEGLE 1010 mallard
XP_017832501  948 GGSQPta--sGSwEGLSELPT-H--GYKLRHQTQGRPRPPR--TTPPGPSR---PSMs--aPGTRQENGMAt-rLDEGLE 1014 white-tufted-...
XP_016284235  938 GGNQpa--ssGSwEGLSELPT-Y--GLQLRHQTQGRPRPPR--TTPPGPCR---PSAp--gPGTRQENGTAt-rLDEGLE 1004 gray short-ta...
XP_014342943  920 TSSQYshsrsTSfEALIDLPT-E--GTKLDHQTRVRPRPRRnnRQPPSKPPpaqVTDp---LRQEDKNGSR---IDEGVE 990  coelacanth
POI29245      959 agAHPgtppaTA---LMDLPT-A--GERLEHCTKARPRPNR--R--HKQPP---SKPtvqpVAHENSEDRSitrVDEGLE 1025 Chinese bambo...
XP_016156745  962 sgSLPatqpaTAtGFLMDLPT-A--GEKLEHCTKARPRPNR--R--HKQPP---SKPnvqpVACENSEDRSitrVDEGLE 1031 collared flyc...
XP_030651095  957 SPAAPgppag--plprMDLPP-A--GQPLRHPTRARPRPRR--QHHHRPPP---GGPqvppALPQEGNGLSa-rVDEGVE 1025 northern whit...
XP_025282327  996 SPAAPgpqag--plprMDLPPS---GQPLRHPTRARPRPRR--QHHHRPPP---GGPqvppALPQEGNGLSa-rVDEGVE 1064 dingo

XP_016839711 1133 VFFRP--T---------TPTtpivgSPTSDDSSLNTFPTTATASQDGGSPSLSVASQKS 1180 jewel wasp
XP_020949748 1023 EFFSKrlIqq------dRLW-----APEEDPATEGGSTPVPRTLRKKLGTLFAFKKPRS 1070 pig
XP_027321735 1011 DFFTKrlIse-----elHPM-----VLETGPGSAPLVSSSSRTLKKKIGNFFAFKKPKS 1059 mallard
XP_017832501 1015 DFFSRrvMdes----ssYPR-----TLRTMRPGLSE-PPLPPLQKKRRRGLFHFRRPRS 1063 white-tufted-ear marmoset
XP_016284235 1005 DFFSRrvMdesssyprtLRT-----VRPGPGPAEAPLPPLQKKR---RRGLFHFRRPRS 1055 gray short-tailed opossum
XP_014342943  991 EFFKKkvIpda-----nhPQ-----TPRSRTESSSGEPPPQKKRKGQKRSLFNFRKNRG 1039 coelacanth
POI29245     1026 DFFTKrlItee----lpsPT-----VLESSPGSAPLASSSSRTLKKKIGNFFAFKKPKS 1075 Chinese bamboo-partridge
XP_016156745 1032 DFFAKrlItet-----lpPT-----TLETCPGSAPLAPSGSRTLKKKIGNFFAFKKPKS 1080 collared flycatcher
XP_030651095 1026 EFFSKrlIqq------dRLW-----APEEDPATEGGATPVPRTLRKKLGTLFAFKKPRS 1073 northern white-cheeked gibbon
XP_025282327 1065 EFFSKrlIqqd-----------rlwVPEEDPANEGGATPVPRTLRKKLGTLFAFKKPRS 1112 dingo
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap