4RWE


Conserved Protein Domain Family
PBP1_ABC_sugar_binding-like

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cd06321: PBP1_ABC_sugar_binding-like 
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periplasmic sugar-binding domain of uncharacterized ABC-type transport systems
This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Statistics
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PSSM-Id: 380544
Aligned: 18 rows
Threshold Bit Score: 311.916
Created: 8-Apr-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative ligand
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to the periplasmic transport protein receptor for D-glucose and D-galactose

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 #                                                                   
4RWE_A      7 SIGVTVGdlaNPFFVQITKGVELEArklagdKVKVTLVSsgYDLGQQVAQIDNFIAaKVDXIILNAaDSKGIGPAVKRAK 86  Yersinia pestis A1122
ATA54060   36 RVGVLVSdlrNPFFAYIARAVESTLaedsrnAAHITVVSsgFDPQRQDEQLKEMIRqRVQLVIVTPvDSTSLHARVTEAR 115 Variovorax boronic...
EWH11909   30 TVGVAINdlnNPFFLQIVKGAKRKAdeltngKANILVVAsdYSLNRQRWQLAQLVErNTDIVVITAaDQQALASDIQKAI 109 Catenovulum agariv...
SHO42735   25 KIGISLGslgNPFFVTMVNGATAKAkey-npNAEVIAVSadYDLNKQFTQVDNFIAaGVDMILINAvDANAIEVAIKRAQ 103 Desulfopila aestua...
NP_772422  53 SIGVSLGslgNPFFVALSKGAEFEAkka-npNVKVTTVGfeYDLGKQVTQIDNFIAaGVDLILLNPgDPKAIGPAIKKAQ 131 Bradyrhizobium jap...
PHV13404   33 VIGIEASslaNPFFQALVRGIVHYArvv-dpAVEVVTLQneYDSQRNQSNLDQLLTrKVRVLFLNAaSTTDIGPMIAQAR 111 Chitinimonas sp. B...
KMK64491   27 NIGIISGplgNSFYVSLAAGAEAAAkei-npDAKVTVTSyeNDLGKQFNLIDSLTAsGAQLIALVAaDPDAITPAIKKAV 105 Puniceibacterium s...
ADK79213   31 QVAATFGdlgNPFFFTMGKGVEDAAkai-dpNAKVTVQSsgYDLNTQTSQMENFIAnGVDIIILNAaDTAGIAPAVRKAK 109 Sediminispirochaet...
SMF59658   37 SIGLMVQdmsNPFFSAMDRGAKRAAqa---iGAKVNTQDaqLDLANQNTQIDAFIQqGVNLIVISAvDEAGIEPAIARAK 113 Rhizobium oryzae
SHR24498   46 KIGLTVPtlgNPFFVAMSKGAEEVAak---yDAEVITVSadHDLAKQTAQIEDFITkKVDLILLSPfDSAGIAGAVSQAK 122 Mycobacterium absc...
Feature 1              #                                                 #                    
4RWE_A     87 DAGIVVVAVDvaae-gadaTITSDNtqAGAXACKYISdrlkekGNVVIINGppvsaIQNRVEGCESEFKKYPdikvLSSN 165 Yersinia pestis A1122
ATA54060  116 AAGIKVVAVDalvq-gadaAVVTDSraAGKLSCEHLVrtlggkGEVAIIDGppntaAVGRVNGCREALNAAPgvrvVSMA 194 Variovorax boronic...
EWH11909  110 KQGTQVIAVDvsaa-gvvaTVATDNvkAGFQACTHLInqlggvGKIAIINGpnvsaVVDRVDGCNQAIAKASgiqlLQVD 188 Catenovulum agariv...
SHO42735  104 KEGIAVVAVDvsak-gadaTVQTNNvqAGEIACQYIVdklggkGDVIIQNGpqvsaVIDRVNGCRSVFAKAPginvLSDD 182 Desulfopila aestua...
NP_772422 132 AAGIVVVAVDtaae-gadaTVTTNNvqAGEISCQYIVdklggkGDVIIENGpqvsaVIDRVVGCKNVFSKNPgikvLSND 210 Bradyrhizobium jap...
PHV13404  112 MAGIIVIAVDvaae-gahaTVMTDNllAGQIACDYLArsmqgrGKVAIQTGpdvssVRERVSGCKQAWLRYPdiqlVPGD 190 Chitinimonas sp. B...
KMK64491  106 DAGVTVVGMDaaan-aaqaNVVTDNvqGGYIVCSYIAeqmggeGKVALINGpqvqgVIDRIAGCNQALAENSgi-kIVAD 183 Puniceibacterium s...
ADK79213  110 EAGIIVVAADvnadggvdaTVTSNNyqAGTQAGEYIVkrlggkGNIVIINGppvsaVIDRVNGAKEVLAKNPgikiLSDN 189 Sediminispirochaet...
SMF59658  114 EAGIVVIAVDtpak-gadaVVMTDAvqAGEKSCEYLFtklggeGNVLLVDGtpiqtIIDRINGCKNVAKKYPgi-kIVGQ 191 Rhizobium oryzae
SHR24498  123 AAGIPVVALDgfaeggidtVVMSDNvqAGRLAAEYLVeqlnekGNIVIIDGppvsaVTDRIKGFNEVISKYPdi-kVVAN 201 Mycobacterium absc...
Feature 1                                                             #                      #
4RWE_A    166 QNAKGSREGGLEVXTSLLAvnPKIDGVFAINDptAIGADLAAKQAqr-neFFIVGVDGSpDAEEalkrggntLFVATPAQ 244 Yersinia pestis A1122
ATA54060  195 LNGGATKDGGVEQMTRLLArhPKLSGVFAINDlcGIGAELAAQVAgr-rdIVITAMDGSpEVAQrlqd-patLIVGSATQ 272 Variovorax boronic...
EWH11909  189 AQGQGSQAGGEQAMKTILAtyPDVNGVFAINDpsAIGAELEAQNRgk-rnIVITSVDGApIMQQalkn-snaLVSATAAQ 266 Catenovulum agariv...
SHO42735  183 QDAKGSRDGGLNVMQGHLTrfQKIDAVFTINDpqAIGTDLAAKQLkr-dnIIITSVDGApDIEEalk--gntMVEASASQ 259 Desulfopila aestua...
NP_772422 211 QDGKGSREGGLTVAQGYLTrfPKIDAIFAINDpqAIGTDLAARQQnr-tgIVITAVDGApDIEAalkdpaslQIQASASQ 289 Bradyrhizobium jap...
PHV13404  191 YNGKGSPAGGRSAMAQILKadPAVKGVFTINDrqAVGSDKALSDAgr-kdVFLISVDGSpEIADlmr--rkpKVLGSSKQ 267 Chitinimonas sp. B...
KMK64491  184 EEGDASRDSGFSVMQRILTreGKVDGVFAINDpmAIGANLAAKQAgy-sgITIGGFDGGaELVNelk--sesMVAASAAQ 260 Puniceibacterium s...
ADK79213  190 QNAGGNREGGLRVMTDLLTayDNIDAVFAINDptGIGADLAIKQAkrgdeMFVVGVDGApDAVValnd-tnsSFVATPSQ 268 Sediminispirochaet...
SMF59658  192 QASKNDRASGLMVTTDMLTanPDVKGIFGMNDpsALGAVLAVEQAgkaseIVVTGVDGSpEGVAelkr-egsPFIGTATQ 270 Rhizobium oryzae
SHR24498  202 QNGEGNREKALTVMEGILSanKKIDAVFTINDeeAVGVQIAQEQAgredeFFLVSVDGApAAVDaln--kggSFAGTSAQ 279 Mycobacterium absc...
Feature 1                                        
4RWE_A    245 DpQVXASKAVEVGYgilqgnpapkDPILIPVTLID 279 Yersinia pestis A1122
ATA54060  273 SpTLMGQRAAQIGLkllkgqppqqRVLLLPSKLVT 307 Variovorax boronicumulans
EWH11909  267 YpDLMAEKAVELGYqlkqgqklsqQLFLIDPSLVN 301 Catenovulum agarivorans DS-2
SHO42735  260 DpYAMAQMGVDVGVkilngekpaeSMILMPSTLVT 294 Desulfopila aestuarii DSM 18488
NP_772422 290 DpFFMARRAVQVGVgilngqkpasTVELLPSKLVT 324 Bradyrhizobium japonicum USDA 110
PHV13404  268 DpYAMAQKAVELAVtflagktvpqTTIHLKPTLLT 302 Chitinimonas sp. BJB300
KMK64491  261 DpFSLGFQAVKLGAairdgseaagQLVKAPTGLVT 295 Puniceibacterium sp. IMCC21224
ADK79213  269 DpYTMATRAVQVAYeviqgnppkeKLILIPTTLIT 303 Sediminispirochaeta smaragdinae DSM 11293
SMF59658  271 NpGAMVEQAVKIAQdmlngkppaeKTVLIPSVLVT 305 Rhizobium oryzae
SHR24498  280 FpNQMVIDGVALALkiidg-ekvdSEVLIPTEFIT 313 Mycobacterium abscessus subsp. abcessus

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