3WMM,2WJM,4JC9


Conserved Protein Domain Family
pufM

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TIGR01115: pufM 
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photosynthetic reaction center M subunit
This model decribes the photosynthetic reaction center M subunit in non-oxygenic photosynthetic bacteria. Reaction center is an integral membrane pigment-protein that carries out light-driven electron transfer reactions. At the core of reacion center is a collection light-harvesting cofactors and closely associated polypeptides. The core protein complex is made of L, M and H subunits. The common cofactors include bacterichlorophyll, bacteriopheophytins, ubiquinone and no-heme ferrous iron. The net result of electron tranfer reactions is the establishment of proton electrochemical gradient and production of reducing equivalents in form of NADH. Ultimately the process results in the reduction of C02 to carbohydrates(C6H12O6) In non-oxygenic organisms, the electron donor is some organic acid and not water. Much of our current functional understanding of photosynthesis comes from the structural determination, spectroscopic studies and mutational analysis on the reaction center of Rhodobacter sphaeroides. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Statistics
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PSSM-Id: 273451
Aligned: 14 rows
Threshold Bit Score: 410.645
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3WMM_M     1 MPEYQNIFTAVQVRAPAYPGVPLPKG--NLPRIG-RPIFSYWLGKIGDAQIGPIYLGLTGTLSIFFGLVAISIIGFNMLA 77  Thermochromatium te...
P02953     1 MAEYQNIFSQVQVRGPADLGMTEDVN--LANRSG-VGPFSTLLGWFGNAQLGPIYLGSLGVLSLFSGLMWFFTIGIWFWY 77  Rhodobacter sphaero...
P11847     1 MAEYQNFFNQVQVAGAPEMGLKEDVD--TFERTP-AGMFN-ILGWMGNAQIGPIYLGIAGTVSLAFGAAWFFTIGVWYWY 76  Rhodobacter capsulatus
P26279     2 YPEYQNIFTQVQVRGTPEMGMDDAGNnmMEERVG-KPFFSTLAGLFGNGQIGPYYFGWTSIVAFGTGIAWFVIVGFNMLA 80  Roseobacter denitri...
AAB67247   1 MAEYQNIFNRVQVSRPE-AGVPLPNG--DRERIG-KPLLFYWAGKLGNAQIGPIYLGWTGLASILFGLMAILIIGFNFLA 76  Ectothiorhodospira ...
P10718     1 MSEYQNILTGVQVRTAPHS-APIAKG--IFPRLG-KPGFSYWLGKIGDAQIGPIYLGTTGVLSLVFGFFAIEIIGFNLLA 76  Rhodospirillum rubrum
P51751     1 MADYQNILTPCRFAPKPHHGVELPRG--NWAEKA-RPIFVWLLGKIGDASS-DHPPGVAGTVSAVLFAFAFLIIGANFLA 76  Rhodospirillum phot...
P06010     1 MADYQTIYTQIQARG-PHITVSGEWG--DNDRVG-KPFYSYWLGKIGDAQIGPIYLGASGIAAFAFGSTAILIILFNMAA 76  Blastochloris viridis
AAB41577   1 MAEYQNIFTRVQVAGPAHMGVPLPER--DSPRTGkKPWQIHLLGRLGMAQIGPIYLGALGILSIVFGSLATMIIGFNMLA 78  Rubrivivax gelatinosus
2WJM_M     1 MADYQTIYTQIQARG-PHITVSGEWG--DNDRVG-KPFYSYWLGKIGDAQIGPIYLGASGIAAFAFGSTAILIILFNMAA 76  Blastochloris viridis
3WMM_M    78 SVHWDVFQFLKHFFWLGLEPPPPQYGLRIP-PLSEGGWWLMAGLFLTLSILLWWVRTYKRAEALGMSQHLSWAFAAAIFF 156 Thermochromatium te...
P02953    78 QAGWNPAVFLRDLFFFSLEPPAPEYGLSFAaPLKEGGLWLIASFFMFVAVWSWWGRTYLRAQALGMGKHTAWAFLSAIWL 157 Rhodobacter sphaero...
P11847    77 QAGFDPFIFMRDLFFFSLEPPPAEYGLAIA-PLKQGGVWQIASLFMAISVIAWWVRVYTRADQLGMGKHMAWAFLSAIWL 155 Rhodobacter capsulatus
P26279    81 QVGWSIPQFIRQLFWLALEPPSPEYGLSMP-PLNDGGWYIIASFFLLVSVMTWLLRAYLLAEQHKMGKHIFWGFAAAVWL 159 Roseobacter denitri...
AAB67247  77 QVNWDVIQFFRQLFWLGLEPPQAQYGLGIP-PLAEAGWWLMAGFFLTTSILLWWVRMYRRARAWNMGTHVAWAFAAAIFL 155 Ectothiorhodospira ...
P10718    77 SVNWSPMEFGRQFFWLGLEPPAAEYGLGFA-PLAEGGWWQIAGFFLTTSILLWWVRMYRRARALKMGTHTAWAFASAIFL 155 Rhodospirillum rubrum
P51751    77 SVDWNPIEFIRLLPWLALEPPRPNWAWVLA-PMNEGGWWQITGFFLTMSLLVWWWHVYNRARALGLGTHMAWAFASALFL 155 Rhodospirillum phot...
P06010    77 EVHFDPLQFFRQFFWLGLYPPKAQYGMGIP-PLHDGGWWLMAGLFMTLSLGSWWIRVYSRARALGLGTHIAWNFAAAIFF 155 Blastochloris viridis
AAB41577  79 SVGWNPIEFFRQFFWLALEPPSPKYGLKLP-PLNDGGWWLMAGLFLTISILLWWVRMYTRARALGMGTHVAWAFAAAIWL 157 Rubrivivax gelatinosus
2WJM_M    77 EVHFDPLQFFRQFFWLGLYPPKAQYGMGIP-PLHDGGWWLMAGLFMTLSLGSWWIRVYSRARALGLGTHIAWNFAAAIFF 155 Blastochloris viridis
3WMM_M   157 YLVLGFIRPVMMGSWAKAVPFGIFPHLDWTAAFSIRYGNLYYNPFHMLSIAFLYGSALLFAMHGATILSVSRFGGDREID 236 Thermochromatium te...
P02953   158 WMVLGFIRPILMGSWSEAVPYGIFSHLDWTNNFSLVHGNLFYNPFHGLSIAFLYGSALLFAMHGATILAVSRFGGERELE 237 Rhodobacter sphaero...
P11847   156 WSVLGFWRPILMGSWSVAPPYGIFSHLDWTNQFSLDHGNLFYNPFHGLSIAALYGSALLFAMHGATILAVTRFGGERELE 235 Rhodobacter capsulatus
P26279   160 FLVLGLFRPILMGSWSEAVPYGIFPHLDWTTAFSIRYGNLYYNPFHCLSIVFLYGSVLLFCMHGGTILAVTRYGGDRELE 239 Roseobacter denitri...
AAB67247 156 YLSLGFFRPILMGDWSEAVPFGIFPHLDWTTAFSLKYGNLYYNPFHMLCIAFLYGSAVLFAMHGATVLAVGRYGGDGELE 235 Ectothiorhodospira ...
P10718   156 FLSLGFIRPLLMGNFSESVPFGIFPHLEWTNSFSLNYGNFFYNPFHMLSIAFLYGSALLSAMHGATILAVSRLGGDREVE 235 Rhodospirillum rubrum
P51751   156 YLTLGFIRPLLLGNWGEAVPFGLFAHLDWTAAFSLRYGNLYYNPFHMLSIAFLYGSAVLFAMHGATILAVSHLGGDREVE 235 Rhodospirillum phot...
P06010   156 VLCIGCIHPTLVGSWSEGVPFGIWPHIDWLTAFSIRYGNFYYCPWHGFSIGFAYGCGLLFAAHGATILAVARFGGDREIE 235 Blastochloris viridis
AAB41577 158 YLVLGFIRPVLMGSWSEAVPFGIFPHLDWTAAFSLRYGNLFYNPFHALSIAFLYGATLLFAMHGATILAVSRFGGERELE 237 Rubrivivax gelatinosus
2WJM_M   156 VLCIGCIHPTLVGSWSEGVPFGIWPHIDWLTAFSIRYGNFYYCPWHGFSIGFAYGCGLLFAAHGATILAVARFGGDREIE 235 Blastochloris viridis
3WMM_M   237 QITHRGTAAERAALFWRWTMGFNVTMESIHRWAWWCAVLTVITAGIGILLSGTVVDNWYLWAVKHGMAP 305 Thermochromatium tepidum
P02953   238 QIADRGTAAERAALFWRWTMGFNATMEGIHRWAIWMAVLVTLTGGIGILLSGTVVDNWYVWGQNHGMAP 306 Rhodobacter sphaeroides
P11847   236 QIVDRGTASERAALFWRWTMGFNATMEGIHRWAIWMAVMVTLTGGIGILLSGTVVDNWYVWAQVHGYAP 304 Rhodobacter capsulatus
P26279   240 QIYDRGTATERAALFWRWTMGFNATMEGIHRWAWWFAVLTPITGGIGILLTGTVVDNWFIWAQEHHFAP 308 Roseobacter denitrificans OCh 114
AAB67247 236 QITDRGTASDRAMLFWRWTMGFNATMESIHRWGWWFAVLVPITGGIGILLTGTVVDNWYLWAIDHGVAP 304 Ectothiorhodospira shaposhnikovii
P10718   236 QITDRGTAAERAALFWRWTMGFNATMESIHRWAWWFAVLCTFTGAIGILLTGTVVDNWFEWGVKHGLAP 304 Rhodospirillum rubrum
P51751   236 QITDRGTAAERAALFWRWTMG------------------------------------------------ 256 Rhodospirillum photometricum
P06010   236 QITDRGTAVERAALFWRWTIGFNATIESVHRWGWFFSLMVMVSASVGILLTGTFVDNWYLWCVKHGAAP 304 Blastochloris viridis
AAB41577 238 QIADRGTASERAQLFWRWTMGFNATTESIHRWAWWFAVLCPLCGGIGILLSGTVVDNWYLWAVKHGVAP 306 Rubrivivax gelatinosus
2WJM_M   236 QITDRGTAVERAALFWRWTIGFNATIESVHRWGWFFSLMVMVSASVGILLTGTFVDNWYLWCVKHGAAP 304 Blastochloris viridis
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