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Development and characterization of a highly selective M5 PAM probe molecule with improved potency

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Author Information and Affiliations

Received: ; Last Update: March 22, 2013.

Additional diversity-oriented exploration applied to our two previously disclosed, highly selective M5 Positive Allosteric Modulator (PAM) probes (ML129 and ML172) initially met with flat Structure-Activity-Relationship (SAR) and negligible improvements. Speculative incorporation of a novel fragment structure from the unconfirmed, single-point High Throughput Screen (HTS) effort concurrently underway at Scripps Research Institute Molecular Screening Center (SRIMSC) initiated a new series of compounds. SAR around this series provided, for the first time, sub-micromolar functional activity and ultimately led to the selection of ML326 as our 3rd generation M5 PAM probe molecule (hM5 PAM EC50 = 550 nM, hM1–4 > 30 μM, hM5 ACh fold-shift = 19). This best-in-class compound will find utility in assays directed toward understanding M5 receptor signaling both in vitro and, to a more limited extent, in vivo.

Assigned Assay Grant #: X01 MH077607-1 and 1X01 MH077606

Screening Center Name & PI: Scripps Research Institute Molecular Screening Center (SRIMSC), Hugh Rosen

Chemistry Center Name & PI: Vanderbilt Specialized Chemistry Center for Accelerated Probe Development, Craig W. Lindsley

Assay Submitter & Institution: Colleen M. Niswender, Vanderbilt University

PubChem Summary Bioassay Identifier (AID): 2416

Probe Structure & Characteristics

ML326.

ML326

CID/ML#Target NameIC50/EC50 (nM) [SID, AID]Anti-target Name(s)IC50/EC50 (μM) [SID, AID]Fold SelectiveSecondary Assay(s) Name: ACh fold-shift [SID, AID]
CID 57525860/ML326M5 (PAM)550 nM [SID 137294184, AID 651878]M1–M4 (any activity)> 30 μM [SID 137294184, AID 651923, AID 651924, AID 651922, AID 651925]> 55M5 ACh Fold Shift: 20-fold [SID 137294184, AID 651776]

1. Recommendations for Scientific Use of the Probe

•. What limitations in the current state of the art is the probe addressing?

Prior to the earlier M5 PAM probes ML129 and ML172, there was a complete paucity of selective M5 activators. Although these early probes were a tremendous achievement in the field of muscarinic ligands, the physical properties (low solubility <0.1 μM in PBS (at pH = 7.4), high cLogP (5.8) and significant non-specific binding) and micromolar potencies for ML129 and ML172 have limited their utility in in vivo experiments aimed at probing the specific functions of the M5 receptor in animal models.

How will the probe be used?

Given ML326’s improved potency to sub-micromolar levels (hM5 PAM EC50 = 550 nM), low molecular weight (351) and a more favorable cLogP (3.6), relative to the 2nd generation probe ML172, this probe will find greater utility in various animal models to elucidate the specific functions of the M5 receptor. Additionally, ex vivo electrophysiology experiments on slice preparations from various regions of the brain could help define the neurological functioning of the M5 receptor. These future experiments will be greatly aided by the very high M5 receptor selectivity displayed by ML326 over the M1 – M4 receptors.

Who in the research community will use the probe?

Through the use of knock-out (KO) mutant mice, the research community has learned of numerous potential indications for selective M5 ligands, for example, in models of cognition, addiction and cerebral blood flow. Those researchers interested in confirming and extending those early behavioral studies with the KO mice will find our improved probe invaluable in exploring numerous disease states and identifying new therapeutic possibilities.

What is the relevant biology to which the probe can be applied?

In particular, the M5 receptor has been implicated in modifying cognitive impairment (such as that associated with Alzheimer’s disease), cerebrovascular blood flow (potential use with migraines, ischemia and cognitive enhancement) and addiction/withdrawal mechanisms (substance abuse). Validation of even just one of these potential modes of action could help spur increased medical research around selective M5 ligand development, with the potential to significantly impact human health.

2. Materials and Methods

Cell culture and transfections. Chinese hamster ovary (CHO-K1) cells stably expressing rat (r)M1 were purchased from the American Type Culture Collection and cultured according to their indicated protocol. CHO cells stably expressing human (h)M2, hM3, and hM5 were generously provided by A. Levey (Emory University, Atlanta, GA); hM1 and hM4 cDNAs were purchased from Missouri S&T cDNA Resource; rM4 cDNA was provided by T. I. Bonner (National Institutes of Health, Bethesda, MD). hM1, hM4, and rM4 cDNAs were used to stably transfect CHO-K1 cells purchased from the American Type Culture Collection using Lipofectamine2000. To make stable hM2, rM2, hM4 and rM4 cell lines for use in calcium mobilization assays, these cells also were stably transfected with a chimeric G-protein (Gqi5) (provided by B.R. Conklin, University of California, San Francisco) using Lipofectamine 2000. rM1, hM3, and hM5 cells were grown in Ham’s F-12 medium containing 10% heat-inactivated fetal bovine serum (FBS), 20mM HEPES, and 50μg/mL G418 sulfate. hM2–Gqi5 and hM4–Gqi5 cells were grown in the same medium also containing 500 μg/mL Hygromycin B. Stable rM4–Gqi5 cells were grown in DMEM containing 10% heat-inactivated FBS, 20 mM HEPES, 400 μg/mL G418 sulfate, and 500 μg/mL Hygromycin B. All cell culture reagents were purchased from Invitrogen Corp. (Carlsbad, CA) unless otherwise noted.

Calcium Mobilization Assays - Potency determinations. Assays were performed within the Vanderbilt Center for Neuroscience Drug Discovery’s Screening Center. CHO cell lines expressing muscarinic acetylcholine receptors were plated (15,000 cells/20 μL/well) in black-walled, clear-bottomed, TC treated, 384 well plates (Greiner Bio-One, Monroe, North Carolina) in Ham’s F-12, 10% FBS, 20 mM HEPES. The cells were grown overnight at 37 °C in the presence of 5% CO2. The following day, plated cells had their medium exchanged to Assay Buffer (Hank’s balanced salt solution, 20 mM HEPES and 2.5 mM Probenecid (Sigma-Aldrich, St. Louis, MO)) using an ELX405 microplate washer (BioTek), leaving 20 μL/well, followed by addition of with 20 μL of 4.5 μM Fluo-4, AM (Invitrogen, Carlsbad, CA) prepared as a 2.3 mM stock in DMSO and mixed in a 1:1 ratio with 10% (w/v) pluronic acid F-127 and diluted in Assay Buffer for 45 minutes at 37 °C. The dye was then exchanged to Assay Buffer using an ELX405, leaving 20 μL/well and the plates were incubated at room temperature for 10 min prior to assay. Test compounds were transferred to daughter plates using an Echo acoustic plate reformatter (Labcyte, Sunnyvale, CA) and then diluted into Assay Buffer to generate a 2× stock in 0.6% DMSO (0.3% final). Acetylcholine (ACh) EC20 and EC80 were prepared at a 5× stock solution in assay buffer prior to addition to assay plates. Calcium mobilization was measured at 37 °C using a Functional Drug Screening System 6000 or 7000 (FDSS6000 or FDSS7000, Hamamatsu, Japan) kinetic plate reader according to the following protocol. Cells were preincubated with test compound (or vehicle) for 144 seconds prior to the addition of an EC20 concentration of the agonist, ACh. 86 seconds after this addition, an EC80 concentration of ACh was added. Control wells also received a maximal ACh concentration (1 mM) for eventual response normalization. The signal amplitude was first normalized to baseline and then as a percentage of the maximal response to ACh. Microsoft XLfit (IDBS, Bridgewater, NJ) was utilized for curve fitting and EC50 value determination using a four point logistical equation. Compounds showing dose-dependency were assigned ‘Outcome’ = ‘Active’, EC50=‘Value’, and % ACh max=‘Value’.

Calcium Mobilization Assays - Fold-Shift Assays. Assays were performed within the Vanderbilt Center for Neuroscience Drug Discovery’s Screening Center. CHO cell lines expressing muscarinic acetylcholine receptors were plated (15,000 cells/20 μL/well) in black-walled, clear-bottomed, TC treated, 384 well plates (Greiner Bio-One, Monroe, North Carolina) in Ham’s F-12, 10% FBS, 20 mM HEPES. The cells were grown overnight at 37 °C in the presence of 5% CO2. The following day, plated cells had their medium exchanged to Assay Buffer (Hank’s balanced salt solution, 20 mM HEPES and 2.5 mM Probenecid (Sigma-Aldrich, St. Louis, MO)) using an ELX405 microplate washer (BioTek), leaving 20 μL/well, followed by addition of with 20 μL of 4.5 μM Fluo-4, AM (Invitrogen, Carlsbad, CA) prepared as a 2.3 mM stock in DMSO and mixed in a 1:1 ratio with 10% (w/v) pluronic acid F-127 and diluted in Assay Buffer for 45 minutes at 37 °C. The dye was then exchanged to Assay Buffer using an ELX405, leaving 20 μL/well and the plates were incubated at room temperature for 10 min prior to assay. Test compounds were prepared in Assay Buffer to generate a 2× stock in 0.6% DMSO (0.3% final). Acetylcholine (ACh) concentration responses were prepared at a 5× stock solution in assay buffer prior to addition to assay plates. Calcium mobilization was measured at 37 °C using a Functional Drug Screening System 6000 or 7000 (FDSS6000 or FDSS7000, Hamamatsu, Japan) kinetic plate reader according to the following protocol. Cells were preincubated with test compound (or vehicle) for 144 seconds prior to the addition of a concentration response of the agonist ACh and the fluorescence was monitored for a total of 5 min. The signal amplitude was first normalized to baseline and then as a percentage of the maximal response to acetylcholine. Microsoft XLfit (IDBS, Bridgewater, NJ) was utilized for curve fitting and EC50 value determination using a four point logistical equation. Fold-Shift values were calculated by dividing the ACh EC50 in the presence of 30 μM compound by the ACh EC50 in the presence of vehicle. Compounds showing greater than a 3-fold shift were assigned ‘Outcome’ = ‘Active’, ‘Fold-Shift’ =‘Value’, and ‘% ACh max’ = ‘Value’.

2.1. Assays

  • AID 2416: Discovery of Novel Allosteric Modulators of the Muscarinic Receptor M5, summary
  • AID 651878: Discovery of Novel Positive Allosteric Modulators (PAM) of the human Muscarinic Receptor M5: CRC Assay
  • AID 651923: Discovery of Novel Positive Allosteric Modulators (PAM) of the human Muscarinic Receptor M1: CRC Assay
  • AID 651924: Discovery of Novel Positive Allosteric Modulators (PAM) of the human Muscarinic Receptor M2: CRC Assay
  • AID 651922: Discovery of Novel Positive Allosteric Modulators (PAM) of the human Muscarinic Receptor M3: CRC Assay
  • AID 651925: Discovery of Novel Positive Allosteric Modulators (PAM) of the human Muscarinic Receptor M4: CRC Assay
  • AID 651776: Discovery of Novel Positive Allosteric Modulators (PAM) of the Muscarinic Receptor M5: Fold-shift Assay
  • AID 651921: Discovery of Novel Positive Allosteric Modulators (PAM) of the rat Muscarinic Receptor M1: CRC Assay
  • AID 651929: Discovery of Novel Positive Allosteric Modulators (PAM) of the rat Muscarinic Receptor M2: CRC Assay
  • AID 651931: Discovery of Novel Positive Allosteric Modulators (PAM) of the rat Muscarinic Receptor M3: CRC Assay
  • AID 651935: Discovery of Novel Positive Allosteric Modulators (PAM) of the rat Muscarinic Receptor M4: CRC Assay
  • AID 651933: Discovery of Novel Positive Allosteric Modulators (PAM) of the rat Muscarinic Receptor M5: CRC Assay
  • AID 651832: ML326 M5 PAM Competition in Radioligand Binding assays (Eurofins PanLabs)

2.2. Probe Chemical Characterization

Image ml326fu2

Probe compound ML326 (CID 57525860, SID 137294184, VU0467903) was prepared according to the above scheme and provided the following characterization. 1-(2-phenoxyethyl)-5-(trifluoromethoxy)indoline-2,3-dione: TLC Rf = 0.79 (hexane/ethyl acetate 1:1); >98% pure by LCMS (M+H+ = 352); HRMS calcd for C17H13NO4F3[M+H+]; 352.0797 found 352.0795; 1H NMR (400 MHz, CDCl3 calibrated to 7.26) δ7.52-7.46 (m, 2H), 7.31-7.25 (m, 3H), 6.98 (t, J = 7.4 Hz, 1H), 6.82 (d, 2H), 4.28 (t, J = 5.0 Hz, 2H), 4.17 (t, J = 5.0 Hz, 2H); 13C NMR (400 MHz, CDCl3 calibrated to 77.16) δ182.25, 158.27, 157.93, 150.01, 145.44, 131.02, 129.78, 121.75, 118.32, 114.39, 112.89, 65.94, 40.62.

Solubility: Solubility for ML326 in PBS (@ pH = 7.4, final DMSO concentration 1%) was determined to be 1.5 μM, which is ~3-fold higher than its hM5 EC50 and better than the 2nd generation M5 probe compound ML172 (< 0.10 μM), but slightly worse than the 1st generation M5 probe ML129 (3.1 μM).

GSH Conjugates. Not determined due to limitations associated with the ionization properties of ML326 (vide infra) and the miniaturized scale of the assay procedure.

Stability. Stability was determined for ML326 at 23 °C in PBS (no antioxidants or other protectorants, initial ML326 concentration = 100 μM and final DMSO concentration 5%). After 48 hours, 3% of the initial concentration of ML326 remained. However, this is not concerning considering the solubility of ML326 was determined to be 1.5 μM under very similar conditions (vide supra). The 4% additional DMSO used in this stability determination ultimately accounts for the seemingly improved solubility at the later time points (30 minutes and beyond). The relatively constant concentrations seen for time points beyond 30 minutes are consistent with the good chemical stability seen during the preparation of ML326 and are what would be expected from examination of its molecular structure.

Percent Remaining (%)
Compound0 Min15 Min30 Min90 min.24 Hour48 Hour
ML326, CID 57525860100143.93.76.62.9

This data can also be displayed as a graph:

Figure 1. Stability of ML326.

Figure 1Stability of ML326

Compounds added to the SMR collection (MLS#s): MLS004576079 (ML326, CID 57525860, 25.0 mg); MLS004576080 (CID 57525831, 7.6 mg); MLS004576081 (CID 57525868, 11.5 mg); MLS004576082 (CID 57525867, 12.8 mg); MLS004576083 (CID 57525838, 6.5 mg); MLS004576084 (CID 57525847, 5.0 mg).

2.3. Probe Preparation

1-(2-phenoxyethyl)-5-(trifluoromethoxy)indoline-2,3-dione, ML326: The title compound was synthesized in one step from commercially available starting materials according to the following procedure. Into a 20 mL microwave reaction vial, containing a magnetic stir bar, were weighed 5-(trifluoromethoxy)isatin (460 mg, 2.0 mmol), K2CO3 (550 mg, 4.0 mmol), KI (33 mg, 0.20 mmol), followed by acetonitrile (20 mL, 0.1 M) and 2-bromoethyl phenyl ether (480 mg, 2.4 mmol). After being sealed with a crimp cap, the vessel was placed in a microwave reactor and heated to 160 °C for 10 minutes, with magnetic stirring. After cooling to ambient temperature, the reaction was diluted with CH2Cl2 (~20 mL) and washed with brine. The organic layer was separated and dried over Na2SO4. Solvent was removed under reduced pressure and the crude product was purified via flash column chromatography (silica gel, hexane/ethyl acetate, 0% to 50% ethyl acetate gradient). Product containing fractions were combined and the solvents removed under reduced pressure to obtain 583 mg of ML326 (83% yield, >98% pure by LCMS) as a red-orange powder.

3. Results

There are five muscarinic acetylcholine receptor (mAChR) subtypes (M1 – M5) widely expressed in both the central nervous system (CNS) and periphery of mammals. These receptors, whose endogenous agonist is acetylcholine (ACh), play critical roles in regulating a variety of diverse physiological processes. Within the CNS, the M1, M4 and M5 subtypes are believed to be the most important with respect to normal neuronal functioning. Of these three, M5 is the least studied as a combined result of its lower expression levels1 (< 2% of total muscarinic receptor population within the brain) and, until recently, a near absence of highly selective M5 receptor ligands. Much of our current understanding surrounding the function of M5 has come from M5 receptor localization, M5 knock-out mice2 and experiments conducted with non-selective muscarinic ligands.3 It is intriguing to note that the M5 receptor is the only muscarinic receptor observed the substantia nigra pars compacta (based on mRNA detection),4,5 leading to the prediction that M5 functions in addiction/reward mechanisms. This hypothesis was supported in man through the clinically observed correlation between a specific M5 gene mutation and an increase in cigarette consumption (+ 27%), as well as, an increased risk for cannabis dependence (+ 290%).6 Additionally, M5 receptors have been localized on the cerebrovascular system and shown to be critical in the ACh-induced dilation necessary for normal blood perfusion.7 In a broader sense, M5 KO mice show decreased prepulse inhibition,8 CNS neuronal abnormalities and cognitive deficits,9 thus supporting the potential for M5 ligands in the treatment of numerous CNS disorders including schizophrenia, Alzheimer’s disease, ischemia and migraine.

To date, only two publications have described the development of M5 selective ligands. Both manuscripts disclosed positive allosteric modulators (PAMs) culminating in the development of two MLPCN probe molecules: ML12910 and ML17211 (Figure 2). While these molecules demonstrated unprecedented selectivity towards the M5 receptor, their potency and physical properties may indicate why these probes are unlikely to find broad utility in animal models exploring the function of M5. While we have entered into at least one collaborative effort to explore the effects of these M5 PAMs on addictive and reinforced behavior in rats, the physical properties of the current probes will necessitate intracerebroventricular (ICV) infusion for those animal studies. This route of administration is both technically challenging and cost-prohibitive, limiting its use by many laboratories. Identification of a more potent M5 probe that can be administered peripherally would likely result in a broader level of interest throughout the neuropharmacology community.

Figure 2. Prior Art: M5 PAM probe molecules ML129 and ML172.

Figure 2

Prior Art: M5 PAM probe molecules ML129 and ML172.

Using the M5 PAM probes ML129 and ML172 (Figure 2) as a starting point, our first goal was to improve M5 PAM potency by exploring both minor structural modifications and more aggressive changes to the isatin core, while maintaining the excellent muscarinic receptor subtype selectivity demonstrated with ML172. Unfortunately, SAR would continue to be very steep in this series as illustrated by the structures in Figure 3.

Figure 3. Modifications to the isatin core of ML129.

Figure 3

Modifications to the isatin core of ML129.

The most promising compound, SID 137294174, derived from nitromethane addition to the isatin carbonyl, failed to produce a potency which surpassed ML129. Other hydroxyl analogs prepared in a similar vein were generally inactive, with the sole exception being SID 137294171. Comparing SID 137294171 with SID 137294215 confirms the steep SAR within this series where changing a fluorine to a methoxy resulted in a total loss of M5 PAM activity. Surprisingly, even the 3-oxetanyl analog of ML129, SID 137294182, was found to be inactive. This modification, although seemingly minor,12 indicated the importance of a carbonyl or a tertiary hydroxyl at this location. Another approach we explored was through the incorporation of heterocyclic biaryls in place of the methoxy or phenoxy termini found in ML129 and ML127, respectively. This technique had proven successful in our M5 PAM11 and M1 PAM13 programs; however this was not to be the case in this attempt as can be seen from Table 1. Among the more efficacious of these analogs prepared, as judged by their respectable AChmax values, none provided an EC50 value of less than 10 μM.

Table 1. Active heterocyclic biaryl analogs.

Table 1

Active heterocyclic biaryl analogs.

Constantly thwarted by unrelentingly steep SAR, the unpleasant possibility of terminating this project without success was becoming a reality. Fortunately, concurrent with this Extend Characterization Chemical Probe Development Pan (EC CPDP) there was an on-going effort being conducted at SRIMSC to re-screen the expanded MLSMR sample collection against M1, M4, M5 and untransfected CHO cells (1X01 MH077606). During the course of triaging the single-point HTS data, a very weak M5 activator (agonists and PAMs were not distinguishable at this stage) which contained an isatin core and a novel southeastern region was observed (CID 2145491, SID 24816245, Figure 4).

Figure 4. HTS single-point hit.

Figure 4

HTS single-point hit.

Drawing on previously developed SAR from our first M5 PAM probe ML12910 we suspected that this 7-methyl isatin would not show a high level of muscarinic selectivity against M1 and/or M3 due to the absence of the critical 5-trifluoromethoxy substituent. This suspicion was confirmed, at least for the M1 receptor, during the concentration response curve (CRC) phase of the HTS hit progression at Scripps, as can be seen from Figure 5.

Figure 5. CRC overlay for CID 2145491.

Figure 5

CRC overlay for CID 2145491.

Within this CRC overlay is included the M1 agonist trace (blue), the M4 agonist trace (red), the M5 agonist trace (green) and the untransfected CHO cell line agonist trace (black), showing that CID 2145491 has equipotent activity at M1 and M5, while it only possess base line activity at M4 (the red trace mostly obscuring the black trace).

Even before we obtained the CRCs in Figure 5, the single-point HTS hit CID 2145491 was pursued at-risk by exploring the position of the methyl group on the isatin ring in conjunction with various linkers between the isatin nitrogen and the pendant phenyl ring. The percent activities for the examples appearing in Table 2 were generated as single-point activities (in triplicate) with the test compounds present at 30 μM to quickly survey a range of linkers and phenyl substitutions.

Table 2. Methyl isatin analogs.

Table 2

Methyl isatin analogs.

When prepared in-house, the initial HTS hit (SID 137294186, CID 2145491) continued to show a very weak activity of just 33% of the ACh response. Moving down this table, while maintaining the 7-methyl, the SAR was uniformly flat with respect to substitution on the phenyl ring. The most notable exception was seen when the alkyl chain was extended an additional methylene (SID 137294183) to provide a PAM showing 86% AChmax when tested at 30 μM. Realizing the importance of a substituent at the 5-position of the isatin with respect to M5 PAM activity, we prepared a similar library of 5-methyl isatin analogs and were pleased to see a general improvement in single-point activities when compared to the 7-methyl analogs (Table 2). Once again, the most notable exception was seen for the n = 3 propyloxyphenyl analog; however, in the context of the 5-methyl isatin core, this modification was now extremely detrimental with respect to M5 PAM activity, providing a wholly inactive compound (SID 137294189). The next logical step was to incorporate the 5-trifluoromethyoxy group present in our earlier probes, ML129 and ML172, to hopefully improve both M5 potency and selectivity (Table 3).

Table 3. 5-CF3O isatin analogs.

Table 3

5-CF3O isatin analogs.

Much to our surprise, the most interesting, new N-alkyl side chain present in SID 137294183 (Table 2), the propyloxyphenyl moiety, did not provide a highly potent compound in the context of the 5-trifluoromethoxy isatin (Table 3, SID 137294187). Instead, SID 137294187 displayed a hM5 EC50 = 2.0 μM and moderate efficacy of 46% AChmax. This unexpected result demonstrated the importance of not assuming that SAR from one series would necessarily track within even a closely related series (commonly referred to as steep SAR), and the importance of preparing libraries of compounds to increase the probability of discovering productive structural modifications when optimizing allosteric ligands. Accordingly, we discovered that the ethoxylphenyl side chain possessed improved potency and provided, for the first time, M5 PAMs with sub-micromolar potency and robust efficacy. The simplest analog, with an unsubstituted phenyl ring (SID 137294184, CID 57525860, aka ML326), provided a hM5 EC50 = 550 nM and 86% AChmax. The phenyl group was shown to be critical for activity since replacing it with a methyl group (SID 137294196) decreased M5 PAM activity by greater than ~20-fold. Substitution on the terminal phenyl group was simultaneously explored and the most promising examples are included in Table 3. While both the 4-methyl (SID 137294188) and 4-trifluormethyl (SID 137294201) analogs displayed nominally superior potency compared to ML326, their selectivity profiles relative to the other muscarinic receptors was not ideal and showed that the 5-trifluoromethoxy isatin was not a universal solution for providing highly selective M5 PAMs. Selectivity for the M5 receptor versus the M1 – M4 receptors was where ML326 (CID 57525860) displayed its superiority over all the other compounds appearing in Table 3. A full muscarinic selectivity profile for ML326 (a.k.a. VU0467903) was determined against both the human and rat M1 – M5 receptors demonstrating a very high preference for the M5 subtype (Figure 6, a similar profile for the human subtypes was generated - data not shown). This selectivity experiment for ML326 against the rat receptors also provided potency (rM5 EC50 = 470 nM) and efficacy (AChmax = 55%) values which were in good agreement with those determined for the human subtype.

Figure 6. CRC overlay of muscarinic rM1 – rM5 selectivity profile for ML326 (VU0467903).

Figure 6

CRC overlay of muscarinic rM1 – rM5 selectivity profile for ML326 (VU0467903).

Now focusing on ML326, we determined the extent to which this 3rd generation probe was able to left-shift (fold shift) the ACh CRC at the rM5 receptor when present at 30 μM. This experiment determined that ML326 (Figure 7) induced a slightly higher fold shift than ML129 (aka VU0238429) when these two values were determined to be 20-fold and 17-fold, respectively. This represented a marked increase over ML172 which only displays a roughly 5-fold shift in the ACh CRC.11 However, ML172 and ML326 form an attractive pair of highly selective M5 PAMs; one with a lower fold shift and the other with a higher fold shift profile. Having both types of probes is desirable because it has yet to be determined whether a high fold shift M5 PAM or a low fold shift M5 PAM is the optimal treatment for the various disease states in which M5 PAMs may find utility.

Figure 7. ACh fold shift determinations for ML326 (VU0467903) and ML129 (VU0238429), at 30 μM, on the rM5 receptor.

Figure 7

ACh fold shift determinations for ML326 (VU0467903) and ML129 (VU0238429), at 30 μM, on the rM5 receptor.

Very encouraged by the initial in vitro potency and selectivity profile for ML326 we prepared gram quantities and set about characterizing it through our in-house tier 1 DMPK assays (PPB, rat/human microsomal stability with predicted intrinsic clearance, P450 inhibition, rat brain homogenate binding, etc.) and single dose PK/CNS exposure in rat. Many of these experiments were initiated in parallel, including the collection of rat plasma/brain samples; however we encountered insurmountable LCMS/MS analytical quantization issues due to poor ionization of ML326 using ESI, APPI, and APCI ionization probes, which prevented the determination of routine tier 1 DMPK parameters and in vivo rat exposure. Alternative methods including chemical derivatization and UV absorbance also failed to provide the requisite sensitivity for detection of ML326 thus preventing the completion of numerous studies. However, it is worth noting that the inability to quantitate in vivo concentrations of ML326, does not necessarily mean the compound is not present at possibly efficacious levels; that possibility remains to be tested in appropriate animal models. The inability to quantitate ML326 was a truly unexpected, late stage detractor from the generally positive profile for ML326. Future efforts could focus on improving the ionization properties for this class of compounds; potentially through the introduction of weakly basic amines at locations which do not negatively impact potency. Regardless, based on ML326’s superior potency and muscarinic subtype selectivity, this 3rd generation probe will undoubtedly find utility in electrophysiology experiments, in vitro studies of selective M5 activation and potentially even animal models where dose-response effects could still be observed, despite not being able to quantitate systemic exposure. In summary, the profile presented here supports ML326 as the current best-in-class M5 PAM, made freely available to the research community through the MLPCN.

3.1. Dose Response Curves for Probe

See Figure 5 for ML326’s rM5 PAM potency and selectivity against rM1–4 and Figure 6 for the ACh fold shift experiments with ML129 (VU0238429) and ML326 (VU0467903).

3.2. Cellular Activity

The primary screening assays and the muscarinic selectivity (M1 – M4) assays are cell-based assays, indicating that ML326 can interact with its molecular target (the M5 receptor) when applied to cells (at a final DMSO concentration of < 0.5 %). The probe compound did not exhibit acute toxicity in cell-based assays at concentrations up to 30 μM.

3.3. Profiling Assays

To more fully characterize ML326, and to better inform the scientific community about its potential off target activities, this 3rd generation M5 PAM was tested using Eurofins’ (formerly Ricerca’s, formerly MDS Pharma’s) Pan Labs Lead Profiling Screen. This battery of radioligand binding assays consists of 68 common GPCRs, ion channels and transporters where the test compound (ML326) was present at 10 μM. Responses were considered significant if > 50% inhibition was observed. However it should be pointed out that these are only single-point values and that functional selectivity may be significantly better than suggested by these “% inhibitions.” Table 5 presents the Pan Labs results for ML326, which showed a significant response in only ten assays. Also included in Table 5 are some of the previously determined Pan Labs results for ML172 at these ten assays, rather than the full 32 targets at which ML172 showed a significant response. In this respect, ML326 represents an improvement over the 2nd generation M5 PAM by virtue of showing only ten off-target responses, rather than 32 as displayed by ML172. Furthermore, six out of the ten % inhibition values for ML326 are even reduced relative to ML172.

Table 5. Pan Labs profiling of ML326 and selected results for ML172.

Table 5

Pan Labs profiling of ML326 and selected results for ML172.

Additionally, a set of calculated physical properties were determined for ML326 and compared to the 1st- and 2nd generation M5 PAM probes (Table 6). For comparison, this table also shows the averaged values for compounds appearing in the MDDR database (MDL Drug Data Report database, 2010) at two stages of clinical development (Phase I and Launched). ML326 compares favorably with the average values for both Phase I and Launched compounds, and displays a significant improvement over ML172 with respect to cLogP, and LogS (Log of calculated solubility).

Table 6. Calculated property comparison between the M5 probes and MDDR compounds.

Table 6

Calculated property comparison between the M5 probes and MDDR compounds.

4. Discussion

4.1. Comparison to Existing Art and How the New Probe is an Improvement

To date, there are no known selective M5 PAMs other than those developed in our labs, which include the previous two MLPCN M5 probe molecules ML129 and ML172. The most significant improvement in this 3rd generation probe is enhanced potency to a sub-micromolar level (M5 EC50 = 550 nM), surpassing the low micromolar potencies seen for ML129 (M5 EC50 = 1.1 μM) and ML172 (M5 EC50 = 1.9 μM). ML326 also displays an improved ability to enhance the efficacy of ACh at the M5 receptor with an ACh fold shift value of 20× (when ML326 was present at 30 μM), as compared to fold shift values of 17× and 5× as seen for ML129 and ML172, respectively. The physical properties of ML326 are also improved relative to ML172 and it is hoped that this will translate into improved CNS exposure and efficacy, but at present we are unable to ascertain this due to the ionization limitations discussed earlier. Notably, ML326 possess an improved off-target profile relative to the 2nd generation probe ML172, as determined from the Pan Labs Lead Profiling Screen. Finally, similar to ML129 and ML172, ML326 rests firmly in the public domain, which will allow the MLPCN to freely provide this probe to the biomedical research community.

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