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Accession: PRJNA74933 ID: 74933

Homo sapiens (human)

Resource Dataset for the Human Microbiome Project (HMP)

See Genome Information for Homo sapiens
This first clinical study of the Human Microbiome Project (HMP) addresses whether individuals share a core human microbiome. It involves broad determination of the microbiota found in five anatomical sites: the oral cavity, skin, nasal cavity, gastrointestinal tract and vagina. This study will enroll approximately 300 healthy male and female adults, 18-40 years old, from two geographic regions of the US: Houston, TX and St. Louis, MO. The participation of healthy individuals will create a baseline for discovery of the core microbiota typically found in various areas of the human body. The information from this initial study can then be used to help assess the changes in the complement of microbiota found on or within diseased individuals.
AccessionPRJNA74933; dbGaP: phs000228
TypeUmbrella project (Subtype:Authorized Access)
OrganismHomo sapiens[Taxonomy ID: 9606]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens
SubmissionRegistration date: 24-Oct-2011
NHGRI
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments3746
Publications
PubMed1
PMC1
Other datasets
BioSample56296
Genotype and Phenotype (dbGaP)1
SRA Data Details
ParameterValue
Data volume, Gbases22,889
Data volume, Tbytes18.27
Homo sapiens encompasses the following 6 sub-projects:
Project TypeNumber of Projects
Phenotype or Genotype6
BioProject
accession
OrganismTitle
PRJNA48333human metagenomeHuman Microbiome Project (HMP) 16S rRNA Gene Diversity, the diversity of 16S ribosomal RNA genes in the human microbiome: 454 Clinical Production Phase I (NIH Human Microbiome Consortium)
PRJNA48335human metagenomeHuman Microbiome Project (HMP) 16S rRNA Gene Diversity, the diversity of 16S ribosomal RNA genes in the human microbiome: Clinical Production Pilot (PPS) (NIH Human Microbiome Consortium)
PRJNA48475human metagenomeHuman Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human microbiome samples: Mock Pilot (NIH Human Microbiome Consortium)
PRJNA48477human metagenomeHuman Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human microbiome samples: Clinical Pilot (NIH Human Microbiome Consortium)
PRJNA48479human metagenomeHuman Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human microbiome samples: Production Phase (NIH Human Microbiome Consortium)
List all 6 'Phenotype or Genotype' projects...

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