See
Genome Information for Homo sapiens
This first clinical study of the Human Microbiome Project (HMP) addresses whether individuals share a core human microbiome. It involves broad determination of the microbiota found in five anatomical sites: the oral cavity, skin, nasal cavity, gastrointestinal tract and vagina. This study will enroll approximately 300 healthy male and female adults, 18-40 years old, from two geographic regions of the US: Houston, TX and St. Louis, MO. The participation of healthy individuals will create a baseline for discovery of the core microbiota typically found in various areas of the human body. The information from this initial study can then be used to help assess the changes in the complement of microbiota found on or within diseased individuals.
| Accession | PRJNA74933; dbGaP: phs000228 |
| Type | Umbrella project (Subtype:Authorized Access) |
| Organism | Homo sapiens[Taxonomy ID: 9606] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens |
| Submission | Registration date: 24-Oct-2011
NHGRI |
| Relevance | Medical |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (Genomic DNA) | 17503 |
| SRA Experiments | 3746 |
| Protein Sequences | 854968 |
| Publications |
| PubMed | 2 |
| PMC | 2 |
| Other datasets |
| BioSample | 56296 |
| Genotype and Phenotype (dbGaP) | 1 |
Homo sapiens encompasses the following 6 sub-projects:
| Project Type | Number of Projects |
| Phenotype or Genotype | 6 |
BioProject
accession | Organism | Title |
|---|
| PRJNA48333 | human metagenome | Human Microbiome Project (HMP) 16S rRNA Gene Diversity, the diversity of 16S ribosomal RNA genes in the human microbiome: 454 Clinical Production Phase I (NIH Human Microbiome Consortium) | | PRJNA48335 | human metagenome | Human Microbiome Project (HMP) 16S rRNA Gene Diversity, the diversity of 16S ribosomal RNA genes in the human microbiome: Clinical Production Pilot (PPS) (NIH Human Microbiome Consortium) | | PRJNA48475 | human metagenome | Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human microbiome samples: Mock Pilot (NIH Human Microbiome Consortium) | | PRJNA48477 | human metagenome | Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human microbiome samples: Clinical Pilot (NIH Human Microbiome Consortium) | | PRJNA48479 | human metagenome | Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human microbiome samples: Production Phase (NIH Human Microbiome Consortium) |
List all 6 'Phenotype or Genotype' projects...BioProject
accession | Organism | Title |
|---|
| PRJNA48333 | human metagenome | Human Microbiome Project (HMP) 16S rRNA Gene Diversity, the diversity of 16S ribosomal RNA genes in the human microbiome: 454 Clinical Production Phase I (NIH Human Microbiome Consortium) | | PRJNA48335 | human metagenome | Human Microbiome Project (HMP) 16S rRNA Gene Diversity, the diversity of 16S ribosomal RNA genes in the human microbiome: Clinical Production Pilot (PPS) (NIH Human Microbiome Consortium) | | PRJNA48475 | human metagenome | Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human microbiome samples: Mock Pilot (NIH Human Microbiome Consortium) | | PRJNA48477 | human metagenome | Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human microbiome samples: Clinical Pilot (NIH Human Microbiome Consortium) | | PRJNA48479 | human metagenome | Human Microbiome Project (HMP) Metagenomic WGS Projects, deeper sequencing of the human microbiome samples: Production Phase (NIH Human Microbiome Consortium) | | PRJNA50563 | human metagenome | Human Microbiome Project (HMP) 16S rRNA Gene Diversity, the diversity of 16S ribosomal RNA genes in the human microbiome: 454 Clinical Production Phase II (NIH Human Microbiome Consortium) |
Less... |