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AGI_CSIRO_Lferr_CH_V1

Organism name:
Lycium ferocissimum (eudicots)
Isolate:
CSIRO_LF1
BioSample:
SAMN32214984
BioProject:
PRJNA911933
Submitter:
Applied Genomics Initiative
Date:
2023/04/18
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_029784015.1 (latest)
RefSeq assembly accession:
GCF_029784015.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JARBDQ01
Assembly method:
wtdbg2 v. 1.0; racon v. 1.4.21; MaSURCA-polca v. 4.0.9; allhic v. 1
Expected final version:
yes
Genome coverage:
12.0x
Sequencing technology:
Oxford Nanopore PromethION; Illumina NovaSeq

IDs: 16473121 [UID] 42223538 [GenBank] 46506238 [RefSeq]

See Genome Information for Lycium ferocissimum

History (Show revision history)

Comment

Global statistics

Total sequence length1,219,357,132
Total ungapped length1,217,846,032
Gaps between scaffolds0
Number of scaffolds14,905
Scaffold N5069,906,897
Scaffold L509
Number of contigs30,016
Contig N5073,585
Contig L504,133
Total number of chromosomes and plasmids12
Number of component sequences (WGS or clone)14,905

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_029784175.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM056436.1=NC_081342.10
Chromosome 2CM056437.1=NC_081343.10
Chromosome 3CM056438.1=NC_081344.10
Chromosome 4CM056439.1=NC_081345.10
Chromosome 5CM056440.1=NC_081346.10
Chromosome 6CM056441.1=NC_081347.10
Chromosome 7CM056442.1=NC_081348.10
Chromosome 8CM056443.1=NC_081349.10
Chromosome 9CM056444.1=NC_081350.10
Chromosome 10CM056445.1=NC_081351.10
Chromosome 11CM056446.1=NC_081352.10
Chromosome 12CM056447.1=NC_081353.10
unplacedn/an/an/a14,893

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All1,219,357,13214,9051,217,846,03269,906,89715,1110
Chromosome 173,699,376173,570,37673,699,3761,2900
Chromosome 271,815,042171,682,44271,815,0421,3260
Chromosome 371,907,268171,752,36871,907,2681,5490
Chromosome 477,245,170177,112,37077,245,1701,3280
Chromosome 575,835,186175,702,28675,835,1861,3290
Chromosome 674,193,244174,064,34474,193,2441,2890
Chromosome 770,468,508170,368,00870,468,5081,0050
Chromosome 869,906,897169,785,99769,906,8971,2090
Chromosome 970,723,904170,604,20470,723,9041,1970
Chromosome 1068,274,710168,157,51068,274,7101,1720
Chromosome 1166,555,362166,442,96266,555,3621,1240
Chromosome 1264,909,028164,781,02864,909,0281,2800
unplaced363,823,43714,893363,822,13735,060130