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ASM303006v1

Organism name:
Staphylococcus aureus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: CFSAN018749
BioSample:
SAMN08668672
BioProject:
PRJNA243331
Submitter:
FDA/CFSAN
Date:
2018/04/02
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003030065.1 (latest)
RefSeq assembly accession:
GCF_003030065.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 2.0
Expected final version:
yes
Genome coverage:
160.0x
Sequencing technology:
PacBio

IDs: 1656721 [UID] 6315818 [GenBank] 6328018 [RefSeq]

See Genome Information for Staphylococcus aureus

There are 90968 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Bacterial culture available from Dwayne Roberson, FDA College Park Campus, 5001 Campus Drive, College ... Park, MD 20740.  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/01/2023 03:53:37
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,901
CDSs (total)::2,819
Genes (coding)::2,711
CDSs (with protein)::2,711
Genes (RNA)::82
rRNAs::7, 6, 6 (5S, 16S, 23S)
complete rRNAs::7, 6, 6 (5S, 16S, 23S)
tRNAs::59
ncRNAs::4
Pseudo Genes (total)::108
CDSs (without protein)::108
Pseudo Genes (ambiguous residues)::0 of 108
Pseudo Genes (frameshifted)::58 of 108
Pseudo Genes (incomplete)::34 of 108
Pseudo Genes (internal stop)::33 of 108
Pseudo Genes (multiple problems)::15 of 108
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,918,141
Total ungapped length2,918,141
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003030075.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP028190.1=NZ_CP028190.1
Plasmid pGMI14-005CP028191.1=NZ_CP028191.1

Assembly statistics

MoleculeTotal
Length
All2,918,141
Chromosome 2,913,744
Plasmid pGMI14-0054,397

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Staphylococcus aureusStaphylococcus aureus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_006094915.1Staphylococcus aureustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_006094915.1Staphylococcus aureustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.5088.3092.60
Best-match type97.5088.3092.60

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna