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ASM285039v1

Organism name:
Staphylococcus aureus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: K17
BioSample:
SAMN06702660
BioProject:
PRJNA376656
Submitter:
CENTER FOR INTERDISCIPLINARY STUDIES IN SCIENCE AND TECHNOLOGY
Date:
2018/01/03
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_002850395.1 (latest)
RefSeq assembly accession:
GCF_002850395.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
GS De Novo Assembler v. July 2016
Expected final version:
yes
Genome coverage:
55.0x
Sequencing technology:
IonTorrent

IDs: 1504281 [UID] 5828068 [GenBank] 5858238 [RefSeq]

See Genome Information for Staphylococcus aureus

There are 90968 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Dr. Anju P. Kunjadiya.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::11/30/2023 14:53:18
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,742
CDSs (total)::2,678
Genes (coding)::2,561
CDSs (with protein)::2,561
Genes (RNA)::64
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
tRNAs::56
ncRNAs::4
Pseudo Genes (total)::117
CDSs (without protein)::117
Pseudo Genes (ambiguous residues)::0 of 117
Pseudo Genes (frameshifted)::71 of 117
Pseudo Genes (incomplete)::37 of 117
Pseudo Genes (internal stop)::22 of 117
Pseudo Genes (multiple problems)::11 of 117
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,729,453
Total ungapped length2,729,453
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002850405.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP020713.1=NZ_CP020713.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,729,453

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Staphylococcus aureusStaphylococcus aureus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_022869625.1Staphylococcus aureustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_022869625.1Staphylococcus aureustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0394.2992.49
Best-match type99.0394.2992.49

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna