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Source database (GenBank or RefSeq) File type

ASM15953v2

Organism name:: Staphylococcus aureus subsp. aureus TCH60 (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: MRSA_TCH60
BioSample:: SAMN00002240
BioProject:: PRJNA31539
Submitter:: Baylor College of Medicine
Date:: 2010/11/23
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_000159535.2 (latest)
RefSeq assembly accession:: GCF_000159535.2 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Newbler Assembler v. 2.3.10192009
Genome coverage:: 32x
Sequencing technology:: 454

IDs: 372198 [UID] 240698 [GenBank] 372198 [RefSeq]

See Genome Information for Staphylococcus aureus

Pathogen Detection Resources

There are 90968 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000159535.2	=	GCF_000159535.2	ASM15953v2	Complete Genome	Latest GenBank, Latest RefSeq
GCA_000159535.1	=	GCF_000159535.1	ASM15953v1	Scaffold	Replaced GenBank, Replaced RefSeq

Comment

Staphylococcus aureus MRSA TCH60

 Strain source, body site: skin

 Inquiries should be directed to microbe@hgsc.bcm.tmc.edu

 This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. Source DNA provided by ... Kaplan, S., Mason, E., Hulten, K. (Department of Pediatric Infectious Diseases, Texas Children's Hospital, 1102 Bates, #1150, Feigin Center, MC 3-1271, Houston, TX 77030). Funded by "Genomes and Genetics at BCM-HGSC" (U54 HG003273).
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::10/01/2023 00:47:29
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,794
CDSs (total)::2,712
Genes (coding)::2,588
CDSs (with protein)::2,588
Genes (RNA)::82
rRNAs::7, 6, 6 (5S, 16S, 23S)
complete rRNAs::7, 6, 6 (5S, 16S, 23S)
tRNAs::59
ncRNAs::4
Pseudo Genes (total)::124
CDSs (without protein)::124
Pseudo Genes (ambiguous residues)::0 of 124
Pseudo Genes (frameshifted)::81 of 124
Pseudo Genes (incomplete)::32 of 124
Pseudo Genes (internal stop)::28 of 124
Pseudo Genes (multiple problems)::15 of 124
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,827,166
Total ungapped length	2,827,166
Total number of chromosomes and plasmids	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP002110.1	=	NC_017342.1
Plasmid unnamed	CP002111.1	=	NC_017345.1

Molecule	Total Length
All	2,827,166
Chromosome	2,802,675
Plasmid unnamed	24,491

	ANI	Query coverage	Subject coverage
Declared type	97.52	91.16	92.47
Best-match type	97.52	91.16	92.47

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ASM15953v2

See Genome Information for Staphylococcus aureus

Pathogen Detection Resources

There are 90968 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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