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Release 5

Record removed. This version of the assembly has been suppressed.

Organism name:: Drosophila melanogaster (fruit fly)
BioSample:: SAMN02803731
Submitter:: The FlyBase Consortium/Berkeley Drosophila Genome Project/Celera Genomics
Date:: 2007/10/22
Assembly level:: Chromosome
Genome representation:: full
GenBank assembly accession:: GCA_000001215.1 (suppressed)
RefSeq assembly accession:: GCF_000001215.1 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:: yes

IDs: 3218 [UID] 5318 [GenBank] 3218 [RefSeq]

See Genome Information for Drosophila melanogaster

Pathogen Detection Resources

There are 119 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000001215.4	=	GCF_000001215.4	Release 6 plus ISO1 MT	Chromosome	Latest GenBank, Latest RefSeq
GCA_000001215.3	≠	GCF_000001215.3	Release 6 plus MT	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001215.2	≠	GCF_000001215.2	Release 5	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001215.1	=	GCF_000001215.1	Release 5	Chromosome	GenBank suppressed, RefSeq suppressed

Comment

This is Release 5 of the Drosophila melanogaster genome, produced jointly by the Berkeley Drosophila Genome Project, Celera Genomics, and the Drosophila Heterochromatin Genome Project. The gene annotation is based on Release 5.57 (FB2014_03) provided by FlyBase. Additional information ... about this assembly and annotation can be found at http://www.fruitfly.org and http://flybase.org.  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::FlyBase
Annotation Status::Full annotation
Annotation Version::Release 5.57
URL::http://flybase.org
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	139,485,381
Total ungapped length	136,826,056
Gaps between scaffolds	0
Number of scaffolds	2,479
Scaffold N50	23,011,544
Scaffold L50	3
Number of contigs	3,058
Contig N50	21,485,538
Contig L50	3
Total number of chromosomes and plasmids	8
Number of component sequences (WGS or clone)	2,502

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome X	AE014298.4	=	NC_004354.3	1
Chromosome 2L	AE014134.5	=	NT_033779.4	1
Chromosome 2R	AE013599.4	=	NT_033778.3	1
Chromosome 3L	AE014296.4	=	NT_037436.3	1
Chromosome 3R	AE014297.2	=	NT_033777.2	1
Chromosome 4	AE014135.3	=	NC_004353.3	0
Chromosome Y	n/a	n/a	n/a	1
Mitochondrion MT	U37541.1	=	NC_001709.1	0
Un	FA000001.1	=	NS_000188.1	0
unplaced	n/a	n/a	n/a	2,466

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	139,485,381	2,479	136,826,056	23,011,544	579	0
Chromosome X	AllAssembled moleculeUnlocalized scaffolds	22,626,93922,422,827204,112	211	22,536,83922,332,727204,112	22,422,82722,422,827204,112	330	000
Chromosome 2L	AllAssembled moleculeUnlocalized scaffolds	23,380,41623,011,544368,872	211	23,309,21623,011,344297,872	23,011,54423,011,544368,872	422	000
Chromosome 2R	AllAssembled moleculeUnlocalized scaffolds	24,435,46921,146,7083,288,761	211	23,868,54921,146,6082,721,941	21,146,70821,146,7083,288,761	26125	000
Chromosome 3L	AllAssembled moleculeUnlocalized scaffolds	27,099,04824,543,5572,555,491	211	26,959,76524,543,4572,416,308	24,543,55724,543,5572,555,491	20119	000
Chromosome 3R	AllAssembled moleculeUnlocalized scaffolds	30,422,56027,905,0532,517,507	211	30,169,35927,905,0532,264,306	27,905,05327,905,0532,517,507	14014	000
Chromosome 4	Assembled molecule	1,351,857	1	1,351,757	1,351,857	1	0
Chromosome Y	AllAssembled moleculeUnlocalized scaffolds	347,0380347,038	101	242,8060242,806	347,0380347,038	56056	000
Mitochondrion MT	Assembled molecule	19,517	1	19,517	19,517	0	0
unplaced	Assembled molecule	9,802,537	2,466	8,368,248	12,827	455	0

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Release 5

See Genome Information for Drosophila melanogaster

Pathogen Detection Resources

There are 119 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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