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Os127742RS1

Organism name:
Oryza sativa Indica Group (long-grained rice)
BioSample:
SAMN12672924
BioProject:
PRJNA563359
Submitter:
University of Arizona
Date:
2020/01/06
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_009831045.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
VYIB01
Assembly method:
FALCON v. 2017.06.28-18.01-py2.7-ucs4; MECAT v. 2-20190314; CANU v. 1.5
Expected final version:
no
Genome coverage:
105.0x
Sequencing technology:
PacBio Sequel; Illumina

IDs: 5433811 [UID] 15732428 [GenBank]

See Genome Information for Oryza sativa

There are 107 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length394,601,903
Total ungapped length394,601,503
Gaps between scaffolds4
Number of scaffolds44
Scaffold N5026,007,178
Scaffold L507
Number of contigs44
Contig N5026,007,178
Contig L507
Total number of chromosomes and plasmids12
Number of component sequences (WGS or clone)44

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_009831055.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM020682.1n/an/a0
Chromosome 2CM020683.1n/an/a0
Chromosome 3CM020684.1n/an/a0
Chromosome 4CM020685.1n/an/a0
Chromosome 5CM020686.1n/an/a0
Chromosome 6CM020687.1n/an/a0
Chromosome 7CM020688.1n/an/a0
Chromosome 8CM020689.1n/an/a0
Chromosome 9CM020690.1n/an/a0
Chromosome 10CM020691.1n/an/a0
Chromosome 11CM020692.1n/an/a0
Chromosome 12CM020693.1n/an/a0
unplacedn/an/an/a28

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All394,601,90344394,601,50326,007,17804
Chromosome 144,389,110244,389,01027,051,41601
Chromosome 238,145,511238,145,41124,238,88701
Chromosome 339,183,656139,183,65639,183,65600
Chromosome 436,994,916136,994,91636,994,91600
Chromosome 530,835,662130,835,66230,835,66200
Chromosome 632,214,687132,214,68732,214,68700
Chromosome 730,657,547230,657,44717,701,43001
Chromosome 830,034,931130,034,93130,034,93100
Chromosome 924,975,197124,975,19724,975,19700
Chromosome 1025,709,007125,709,00725,709,00700
Chromosome 1132,028,703232,028,60318,305,48601
Chromosome 1226,007,178126,007,17826,007,17800
unplaced3,425,798283,425,798122,38600