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7SYI: 
Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)
Biological unit 1: 36-meric
Source organism: Hepacivirus hominis, ▼
Taxonomy
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Taxonomy Molecule
Hepacivirus hominis z
Oryctolagus cuniculus 2, B, C, D, E, F, G, H, I, J, K, L,
M, N, O, P, Q, R, S, T, U, V, W,
X, Y, Z, a, b, c, d, e, f, g, h
, n
Number of proteins:
34 (40S ribosomal protein S21, 40S ribosomal protei... ▼)
Protein molecule
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BB -Click to explore this molecule neighbors
 40S ribosomal protein SA
CC -Click to explore this molecule neighbors
 eS1
DD -Click to explore this molecule neighbors
 uS5 (S2)
EE -Click to explore this molecule neighbors
 uS3
FF -Click to explore this molecule neighbors
 40S ribosomal protein S4
GG -Click to explore this molecule neighbors
 uS7
HH -Click to explore this molecule neighbors
 eS6
II -Click to explore this molecule neighbors
 40S ribosomal protein S7
JJ -Click to explore this molecule neighbors
 eS8
KK -Click to explore this molecule neighbors
 uS4
LL -Click to explore this molecule neighbors
 eS10
MM -Click to explore this molecule neighbors
 uS17
NN -Click to explore this molecule neighbors
 eS12
OO -Click to explore this molecule neighbors
 uS15
PP -Click to explore this molecule neighbors
 uS11
QQ -Click to explore this molecule neighbors
 uS19
RR -Click to explore this molecule neighbors
 uS9
SS -Click to explore this molecule neighbors
 eS17
TT -Click to explore this molecule neighbors
 uS13
UU -Click to explore this molecule neighbors
 eS19
VV -Click to explore this molecule neighbors
 uS10
WW -Click to explore this molecule neighbors
 40S ribosomal protein S21
XX -Click to explore this molecule neighbors
 uS8
YY -Click to explore this molecule neighbors
 uS12
ZZ -Click to explore this molecule neighbors
 40S ribosomal protein S24
aa -Click to explore this molecule neighbors
 eS25 (S25)
bb -Click to explore this molecule neighbors
 eS26 (S26)
cc -Click to explore this molecule neighbors
 eS27
dd -Click to explore this molecule neighbors
 eS28
ee -Click to explore this molecule neighbors
 eS29
ff -Click to explore this molecule neighbors
 eS30
gg -Click to explore this molecule neighbors
 40S ribosomal protein S27a
hh -Click to explore this molecule neighbors
 RACK1
nn -Click to explore this molecule neighbors
 60s ribosomal protein l41
Number of nucleotides:
2 (18S rRNA, HCV IRES ▼)
Nucleotide molecule
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18S rRNA
HCV IRES
Number of chemicals:
2 (ZINC ION (2) ▼)
Chemical
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ZINC ION (2)
Similar Structures (168)help
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Showing 1 to 10 out of 168 selected structures help
      PDB ID Description Taxonomy▲▼ Aligned Protein▲▼ RMSD▲▼ Aligned Residues▲▼ Sequence Identity▲▼
1
Expand row
Partial
 7RYF
A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S
Acinetobacter baumannii AB0057
 13 3.97Å 1439 28%
2
Expand row
Partial
 7NAR
Complete Bacterial 30S ribosomal subunit assembly complex state F (+RsgA)(Consensus Refinement)
Escherichia coli K-12
 13 5.34Å 1435 28%
3
Expand row
Partial
 7BOE
Bacterial 30S ribosomal subunit assembly complex state M (Consensus refinement)
Escherichia coli K-12
 12 4.90Å 1367 29%
4
Expand row
Partial
 7BOH
Complete Bacterial 30S ribosomal subunit assembly complex state E (+RbfA)(Consensus Refinement)
Escherichia coli K-12
 12 4.67Å 1361 29%
5
Expand row
Partial
 7OTC
Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B
Escherichia coli BL21(DE3)
 12 5.54Å 1360 28%
6
Expand row
Partial
 7RYG
A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S
Acinetobacter baumannii AB0057
 12 4.55Å 1344 28%
7
Expand row
Partial
 7RYH
A. baumannii Ribosome-TP-6076 complex: Empty 70S
Acinetobacter baumannii AB0057
 12 3.89Å 1342 28%
8
Expand row
Partial
 7KGB
CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9
Mycobacterium tuberculosis H37Rv
 12 3.42Å 1282 27%
9
Expand row
Partial
 7MT2
Mtb 70S initiation complex
Escherichia coli/Mycobacterium tuberculosis/Mycobacterium tuberculosis H37Rv
 12 3.38Å 1280 28%
10
Expand row
Partial
 7MT7
Mtb 70S with P and E site tRNAs
Escherichia coli/Mycobacterium tuberculosis/Mycobacterium tuberculosis H37Rv
 12 3.38Å 1276 27%
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{"2":"40S ribosomal protein SA","3":"eS1","4":"uS5 (S2)","5":"uS3","6":"40S ribosomal protein S4","7":"uS7","8":"eS6","9":"40S ribosomal protein S7","10":"eS8","11":"uS4","12":"eS10","13":"uS17","14":"eS12","15":"uS15","16":"uS11","17":"uS19","18":"uS9","19":"eS17","20":"uS13","21":"eS19","22":"uS10","23":"40S ribosomal protein S21","24":"uS8","25":"uS12","26":"40S ribosomal protein S24","27":"eS25 (S25)","28":"eS26 (S26)","29":"eS27","30":"eS28","31":"eS29","32":"eS30","33":"40S ribosomal protein S27a","34":"RACK1","35":"60s ribosomal protein l41"}
Citing VAST
Gibrat JF, Madej T, Bryant SH. "Surprising similarities in structure comparison.", Curr Opin Struct Biol.1996 Jun;6(3):377-85
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. "MMDB and VAST+: tracking structural similarities between macromolecular complexes." Nucl. Acids Res. 2014 Jan;42(Database issue):D297-303
Thomas Madej, Aron Marchler-Bauer, Christopher Lanczycki, Dachuan Zhang, Stephen H Bryant "Biological Assembly Comparison With VAST" Methods Mol. Biol. 2020(2112):175-186
X
?Original VAST
Original VAST finds structures that are similar to individual protein molecules, or individual 3D domains, in your query structure. Select a protein molecule ("chain") or 3D domain of interest from the table below to view a list of other proteins or domains that have a similar 3D shape. In contrast to VAST+, which focuses on the default biological unit, Original VAST lists all protein molecules in the asymmetric unit of the query structure.