4D26: VAST+ Similar Structure Assemblies and Proteins

National Center for
Biotechnology Information

Crystal structure of the Bombyx mori Vasa helicase (E339Q) in complex with RNA,ADP and Pi

Biological unit 1: dimeric

Source organism: Bombyx mori

Number of proteins:

1 (BMVLG PROTEIN)

Number of nucleotides:

1 (5'-R(*UP*GP*AP*CP*AP*UP)-3')

Number of chemicals:

3 (ADENOSINE-5'-DIPHOSPHATE,MAGNESIUM ION,PHOSPHATE ION ▼)

Chemical

Similar Structures (667)

			PDB ID	Description	Taxonomy▲▼	Aligned Protein▲▼	RMSD▲▼	Aligned Residues▲▼	Sequence Identity▲▼
1	Expand row	Partial	4D25	Crystal structure of the Bombyx mori Vasa helicase (E339Q) in complex with RNA and AMPPNP	Bombyx mori	1	0.31Å	427	100%
2	Expand row	Partial	2DB3	Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa	Others	1	0.68Å	410	60%
3	Expand row	Partial	4TYW	DEAD-box helicase Mss116 bound to ssRNA and ADP-BeF	Saccharomyces cerevisiae/Saccharomyces cerevisiae S288C	1	3.38Å	388	29%
4	Expand row	Partial	4TYN	DEAD-box helicase Mss116 bound to ssDNA and ADP-BeF	Saccharomyces cerevisiae/Saccharomyces cerevisiae S288C	1	3.39Å	387	29%
5	Expand row	Partial	3SQW	Structure of Mss116p (NTE deletion) bound to ssRNA and AMP-PNP	Others	1	3.41Å	386	29%
6	Expand row	Partial	4TZ0	DEAD-box helicase Mss116 bound to ssRNA and GDP-BeF	Saccharomyces cerevisiae/Saccharomyces cerevisiae S288C	1	2.90Å	380	29%
7	Expand row	Partial	4TZ6	DEAD-box helicase Mss116 bound to ssRNA and UDP-BeF	Saccharomyces cerevisiae/Saccharomyces cerevisiae S288C	1	2.70Å	378	28%
8	Expand row	Partial	4TYY	DEAD-box helicase Mss116 bound to ssRNA and CDP-BeF	Saccharomyces cerevisiae/Saccharomyces cerevisiae S288C	1	2.93Å	378	29%
9	Expand row	Partial	3I62	Structure of Mss116p bound to ssRNA and ADP-Aluminum Fluoride	Others	1	2.67Å	376	30%
10	Expand row	Partial	2J0Q	The crystal structure of the Exon Junction Complex at 3.2 A resolution	Others	1	2.32Å	375	30%

{"1":"BMVLG PROTEIN"}

	Full	Complete match, 1 proteins (8)	–
	Partial	Partial match, 1 protein (659)	–