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3J81:
CryoEM structure of a partial yeast 48S preinitiation complex
PDB ID:
3J81
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MMDB ID:
124436
PDB Deposition Date:
2014/8/29
Updated in MMDB:
2022/11
Experimental Method:
electron microscopy
Resolution:
4 Å
Source Organism:
synthetic construct
▼
Taxonomy
Molecule
synthetic construct
1, 3
Kluyveromyces lactis
2, A, B, C, D, E, F, G, H, I, J, K,
L, M, N, O, P, Q, R, S, T, U, V,
W, X, Y, Z, a, b, c, f, g, d, e
Saccharomyces cerevisiae
h, i, j, m, k, l
Similar Structures:
VAST+
Download sequence data
Biological Unit for 3J81: 42-meric; determined by author
Molecular Components in 3J81
Label
Count
Molecule
Proteins (39 molecules)
A
1
US2
B
1
ES1
C
1
US5
D
1
US3
E
1
ES4
F
1
US7
G
1
ES6
H
1
ES7
I
1
ES8
J
1
US4
K
1
Es10
L
1
Us17
M
1
Es12
N
1
Us15
O
1
Us11
P
1
Us19
Q
1
US9
R
1
Es17
S
1
Us13
T
1
Es19
U
1
Us10
V
1
Es21
W
1
US8
X
1
Us12
Y
1
Es24
Z
1
Es25
a
1
Es26
b
1
Es27
c
1
Es28
f
1
Es31
g
1
Rack1
d
1
Us14
e
1
Es30
h
1
El41
i
1
Eif1a
j
1
Eif2 Alpha
m
1
Eif1
k
1
Eif2 Gamma
l
1
Eif2 Beta
Nucleotides(3 molecules)
2
1
18S rRNA
1
1
Met-trnai
3
1
mRNA
Chemicals and Non-standard biopolymers (85 molecules)
1
81
MAGNESIUM ION
2
3
ZINC ION
3
1
METHIONINE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303