5FY9: Crystal structure of the catalytic domain of human JARID1B in complex with pyruvate

PDB ID: 5FY9Download
MMDB ID: 148483
PDB Deposition Date: 2016/3/4
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 2.03  Å
Source Organism:
Similar Structures:
Biological Unit for 5FY9: monomeric; determined by author and by software (PISA)
Molecular Components in 5FY9
Label Count Molecule
Protein (1 molecule)
1
Lysine-specific Demethylase 5B, Lysine-specific Demethylase 5B
(Gene symbol: KDM5B)
Molecule annotation
Chemicals and Non-standard biopolymers (16 molecules)
1
3
MANGANESE (II) IONMANGANESE (II) ION
2
2
ZINC IONZINC ION
3
1
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4
9
1,2-ETHANEDIOL1,2-ETHANEDIOL
5
1
PYRUVIC ACIDPYRUVIC ACID
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303