2O5J: Crystal structure of the T. thermophilus RNAP polymerase elongation complex with the NTP substrate analog

PDB ID: 2O5JDownload
MMDB ID: 104937
PDB Deposition Date: 2006/12/6
Updated in MMDB: 2012/11
Experimental Method:
x-ray diffraction
Resolution: 3  Å
Source Organism:
Thermus thermophilus HB8▼
Similar Structures:
Biological Unit for 2O5J: octameric; determined by author
Molecular Components in 2O5J
Label Count Molecule
Proteins (5 molecules)
2
DNA-directed RNA Polymerase Alpha Chain
Molecule annotation
1
DNA-directed RNA Polymerase Beta Chain
Molecule annotation
1
DNA-directed RNA Polymerase Beta' Chain
Molecule annotation
1
DNA-directed RNA Polymerase Omega Chain
Molecule annotation
Nucleotides(3 molecules)
1
5'-d(p*cp*cp*cp*tp*gp*tp*cp*tp*gp*gp*cp*gp*tp*tp*cp*gp*cp*gp*cp*gp*cp*cp*g)-3'
Molecule annotation
1
5'-r(p*gp*ap*gp*up*cp*up*gp*cp*gp*gp*cp*gp*cp*gp*cp*g)-3'
Molecule annotation
1
5'-d(*ap*ap*cp*gp*cp*cp*ap*gp*ap*cp*ap*gp*gp*g)-3'
Molecule annotation
Chemicals and Non-standard biopolymers (5 molecules)
1
2
ZINC IONZINC ION
2
2
MAGNESIUM IONMAGNESIUM ION
3
1
DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTERDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303