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Conserved domains on  [gi|242332520|ref|NP_001156375|]
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coiled-coil domain-containing protein 71L [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CCDC71L super family cl21212
Coiled-coil domain-containing protein 71L; The protein family, Coiled-coil domain-containing ...
 32-111 4.10e-17

Coiled-coil domain-containing protein 71L; The protein family, Coiled-coil domain-containing protein 71L, is a domain of unknown function, which is found in eukaryotes.


The actual alignment was detected with superfamily member pfam15374:

Pssm-ID: 464682  Cd Length: 383  Bit Score: 78.72  E-value: 4.10e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242332520   32 EEKVVYSRSQLSLAGSTeALGDAFKLFMPSSTEFMSSEAELWSFLCSLKHQ-FSPHILRSKDVYGYSSCRALVPDP---P 107
Cdd:pfam15374   2 EEKAVHSWSRISSAGQK-ALEEALRVFNPMSKDLSDTETQLVAFLQGLREEgYQPTILRSKDVYGYSSCTARTPSQtklS 80


                  ....
gi 242332520  108 APDS 111
Cdd:pfam15374  81 ARDT 84
CCDC71L super family cl21212
Coiled-coil domain-containing protein 71L; The protein family, Coiled-coil domain-containing ...
 168-211 7.19e-03

Coiled-coil domain-containing protein 71L; The protein family, Coiled-coil domain-containing protein 71L, is a domain of unknown function, which is found in eukaryotes.


The actual alignment was detected with superfamily member pfam15374:

Pssm-ID: 464682  Cd Length: 383  Bit Score: 36.73  E-value: 7.19e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 242332520  168 TPTLTSFPTIRVGDDVWGERslavARRRASQVLRVDLDPVVRLR 211
Cdd:pfam15374 342 TLNLLKFKAIKVDRSSSDDE----VRRKAQKILRVNLSPVIRIQ 381
 
Name Accession Description Interval E-value
CCDC71L pfam15374
Coiled-coil domain-containing protein 71L; The protein family, Coiled-coil domain-containing ...
 32-111 4.10e-17

Coiled-coil domain-containing protein 71L; The protein family, Coiled-coil domain-containing protein 71L, is a domain of unknown function, which is found in eukaryotes.


Pssm-ID: 464682  Cd Length: 383  Bit Score: 78.72  E-value: 4.10e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242332520   32 EEKVVYSRSQLSLAGSTeALGDAFKLFMPSSTEFMSSEAELWSFLCSLKHQ-FSPHILRSKDVYGYSSCRALVPDP---P 107
Cdd:pfam15374   2 EEKAVHSWSRISSAGQK-ALEEALRVFNPMSKDLSDTETQLVAFLQGLREEgYQPTILRSKDVYGYSSCTARTPSQtklS 80


                  ....
gi 242332520  108 APDS 111
Cdd:pfam15374  81 ARDT 84
CCDC71L pfam15374
Coiled-coil domain-containing protein 71L; The protein family, Coiled-coil domain-containing ...
 168-211 7.19e-03

Coiled-coil domain-containing protein 71L; The protein family, Coiled-coil domain-containing protein 71L, is a domain of unknown function, which is found in eukaryotes.


Pssm-ID: 464682  Cd Length: 383  Bit Score: 36.73  E-value: 7.19e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 242332520  168 TPTLTSFPTIRVGDDVWGERslavARRRASQVLRVDLDPVVRLR 211
Cdd:pfam15374 342 TLNLLKFKAIKVDRSSSDDE----VRRKAQKILRVNLSPVIRIQ 381
 
Name Accession Description Interval E-value
CCDC71L pfam15374
Coiled-coil domain-containing protein 71L; The protein family, Coiled-coil domain-containing ...
 32-111 4.10e-17

Coiled-coil domain-containing protein 71L; The protein family, Coiled-coil domain-containing protein 71L, is a domain of unknown function, which is found in eukaryotes.


Pssm-ID: 464682  Cd Length: 383  Bit Score: 78.72  E-value: 4.10e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242332520   32 EEKVVYSRSQLSLAGSTeALGDAFKLFMPSSTEFMSSEAELWSFLCSLKHQ-FSPHILRSKDVYGYSSCRALVPDP---P 107
Cdd:pfam15374   2 EEKAVHSWSRISSAGQK-ALEEALRVFNPMSKDLSDTETQLVAFLQGLREEgYQPTILRSKDVYGYSSCTARTPSQtklS 80


                  ....
gi 242332520  108 APDS 111
Cdd:pfam15374  81 ARDT 84
CCDC71L pfam15374
Coiled-coil domain-containing protein 71L; The protein family, Coiled-coil domain-containing ...
 168-211 7.19e-03

Coiled-coil domain-containing protein 71L; The protein family, Coiled-coil domain-containing protein 71L, is a domain of unknown function, which is found in eukaryotes.


Pssm-ID: 464682  Cd Length: 383  Bit Score: 36.73  E-value: 7.19e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 242332520  168 TPTLTSFPTIRVGDDVWGERslavARRRASQVLRVDLDPVVRLR 211
Cdd:pfam15374 342 TLNLLKFKAIKVDRSSSDDE----VRRKAQKILRVNLSPVIRIQ 381
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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