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Conserved domains on  [gi|976699939|gb|KVF94839|]
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hypothetical protein WJ20_02565 [Burkholderia vietnamiensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Imm72 super family cl21385
Immunity protein 72; A predicted immunity protein with a mostly all-beta fold and GxxE, WxDxRY ...
 191-285 6.21e-21

Immunity protein 72; A predicted immunity protein with a mostly all-beta fold and GxxE, WxDxRY motifs and a glutamate residue. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbour of the toxin gene, which usually contains toxin domains of the Ntox48 family. This domain is often fused to the Imm71 immunity domain.


The actual alignment was detected with superfamily member pfam15584:

Pssm-ID: 292218  Cd Length: 81  Bit Score: 85.70  E-value: 6.21e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 976699939  191 VPEPVGPVVKSGDKVPCDGIWEPVTVEQskllgvvpvgnrslhNNGCFNYFIRDIRAPNLRDDETRTPVKTHWRLLWEDK 270
Cdd:pfam15584   2 VNERRTGEVKSGDPIPVDGIWEPWNIFK---------------NLGCPNYFLRGMKAYQYLMEGTDDYRDVRWRLVWEDT 66

                          90
                  ....*....|....*
gi 976699939  271 RYADGIIPDESEYFL 285
Cdd:pfam15584  67 RYCDGIIPDEEEYYF 81
Imm71 super family cl21403
Immunity protein 71; A predicted immunity protein with a mostly alpha-helical fold and ...
 12-90 1.69e-08

Immunity protein 71; A predicted immunity protein with a mostly alpha-helical fold and conserved arginine and phenylalanine residues. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbour of the toxin gene, which usually contains toxin domains of the Ntox48 family. This domain is often fused to the Imm72 immunity domain.


The actual alignment was detected with superfamily member pfam15602:

Pssm-ID: 379737  Cd Length: 158  Bit Score: 53.32  E-value: 1.69e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 976699939   12 DDATRRRIFWLLQRLTSFSLWKRKREAFAIFANEYENAVKTWPED---DPEVMPANNLPIIFEILAAYDRGLPELARGDR 88
Cdd:pfam15602   3 TDDERKQAFYLLKKISSFTAWNRALDLYRAWADATERCARRAPEQgwlELEGGYANDYVRILKGLAHMEEAVRRLRKGDK 82


                  ..
gi 976699939   89 SV 90
Cdd:pfam15602  83 RI 84
 
Name Accession Description Interval E-value
Imm72 pfam15584
Immunity protein 72; A predicted immunity protein with a mostly all-beta fold and GxxE, WxDxRY ...
 191-285 6.21e-21

Immunity protein 72; A predicted immunity protein with a mostly all-beta fold and GxxE, WxDxRY motifs and a glutamate residue. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbour of the toxin gene, which usually contains toxin domains of the Ntox48 family. This domain is often fused to the Imm71 immunity domain.


Pssm-ID: 292218  Cd Length: 81  Bit Score: 85.70  E-value: 6.21e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 976699939  191 VPEPVGPVVKSGDKVPCDGIWEPVTVEQskllgvvpvgnrslhNNGCFNYFIRDIRAPNLRDDETRTPVKTHWRLLWEDK 270
Cdd:pfam15584   2 VNERRTGEVKSGDPIPVDGIWEPWNIFK---------------NLGCPNYFLRGMKAYQYLMEGTDDYRDVRWRLVWEDT 66

                          90
                  ....*....|....*
gi 976699939  271 RYADGIIPDESEYFL 285
Cdd:pfam15584  67 RYCDGIIPDEEEYYF 81
Imm71 pfam15602
Immunity protein 71; A predicted immunity protein with a mostly alpha-helical fold and ...
 12-90 1.69e-08

Immunity protein 71; A predicted immunity protein with a mostly alpha-helical fold and conserved arginine and phenylalanine residues. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbour of the toxin gene, which usually contains toxin domains of the Ntox48 family. This domain is often fused to the Imm72 immunity domain.


Pssm-ID: 379737  Cd Length: 158  Bit Score: 53.32  E-value: 1.69e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 976699939   12 DDATRRRIFWLLQRLTSFSLWKRKREAFAIFANEYENAVKTWPED---DPEVMPANNLPIIFEILAAYDRGLPELARGDR 88
Cdd:pfam15602   3 TDDERKQAFYLLKKISSFTAWNRALDLYRAWADATERCARRAPEQgwlELEGGYANDYVRILKGLAHMEEAVRRLRKGDK 82


                  ..
gi 976699939   89 SV 90
Cdd:pfam15602  83 RI 84
 
Name Accession Description Interval E-value
Imm72 pfam15584
Immunity protein 72; A predicted immunity protein with a mostly all-beta fold and GxxE, WxDxRY ...
 191-285 6.21e-21

Immunity protein 72; A predicted immunity protein with a mostly all-beta fold and GxxE, WxDxRY motifs and a glutamate residue. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbour of the toxin gene, which usually contains toxin domains of the Ntox48 family. This domain is often fused to the Imm71 immunity domain.


Pssm-ID: 292218  Cd Length: 81  Bit Score: 85.70  E-value: 6.21e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 976699939  191 VPEPVGPVVKSGDKVPCDGIWEPVTVEQskllgvvpvgnrslhNNGCFNYFIRDIRAPNLRDDETRTPVKTHWRLLWEDK 270
Cdd:pfam15584   2 VNERRTGEVKSGDPIPVDGIWEPWNIFK---------------NLGCPNYFLRGMKAYQYLMEGTDDYRDVRWRLVWEDT 66

                          90
                  ....*....|....*
gi 976699939  271 RYADGIIPDESEYFL 285
Cdd:pfam15584  67 RYCDGIIPDEEEYYF 81
Imm71 pfam15602
Immunity protein 71; A predicted immunity protein with a mostly alpha-helical fold and ...
 12-90 1.69e-08

Immunity protein 71; A predicted immunity protein with a mostly alpha-helical fold and conserved arginine and phenylalanine residues. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbour of the toxin gene, which usually contains toxin domains of the Ntox48 family. This domain is often fused to the Imm72 immunity domain.


Pssm-ID: 379737  Cd Length: 158  Bit Score: 53.32  E-value: 1.69e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 976699939   12 DDATRRRIFWLLQRLTSFSLWKRKREAFAIFANEYENAVKTWPED---DPEVMPANNLPIIFEILAAYDRGLPELARGDR 88
Cdd:pfam15602   3 TDDERKQAFYLLKKISSFTAWNRALDLYRAWADATERCARRAPEQgwlELEGGYANDYVRILKGLAHMEEAVRRLRKGDK 82


                  ..
gi 976699939   89 SV 90
Cdd:pfam15602  83 RI 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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